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fixed atom_tools #182

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merged 16 commits into from
Dec 15, 2024
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dependency update
ahoust17 committed Sep 14, 2024
commit b7da4ee278c22a3b6e35377c15ce7afd8dbd809d
12 changes: 2 additions & 10 deletions notebooks/4Dstem_File_Reader.ipynb
Original file line number Diff line number Diff line change
@@ -6,7 +6,7 @@
"source": [
"# Basics of reading an MRC file with 4D STEM data from the Spectra300 at UTK\n",
"## By Austin Houston\n",
"### Last updated 2024-09-03"
"### Last updated 2024-09-14"
]
},
{
@@ -31,23 +31,15 @@
"import numpy as np\n",
"import matplotlib.pyplot as plt\n",
"\n",
"sys.path.insert(0, '/Users/austin/Documents/GitHub/SciFiReaders/')\n",
"import SciFiReaders\n",
"print(\"SciFiReaders version: \", SciFiReaders.__version__)\n",
"\n",
"sys.path.insert(0,'/Users/austin/Documents/GitHub/pyTEMlib/')\n",
"import pyTEMlib\n",
"import pyTEMlib.file_tools as ft\n",
"\n",
"print(\"pyTEMlib version: \", pyTEMlib.__version__)\n",
"\n",
"\n",
"# for beginning analysis\n",
"from sklearn.cluster import KMeans\n",
"from sklearn.decomposition import PCA\n",
"from sklearn.cluster import KMeans\n",
"from mpl_toolkits.mplot3d import Axes3D\n",
"from scipy.ndimage import center_of_mass\n"
"from sklearn.cluster import KMeans\n"
]
},
{