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Interactive demo for GNN+LLM (chatgpt-like) #9417

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b927876
drafting
puririshi98 Jun 11, 2024
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drafting
puririshi98 Jun 11, 2024
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[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 11, 2024
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drafting
puririshi98 Jun 11, 2024
d964586
Merge branch 'interactive-demo' of https://github.com/pyg-team/pytorc…
puririshi98 Jun 11, 2024
700112b
drafting
puririshi98 Jun 11, 2024
400c1a6
drafting
puririshi98 Jun 11, 2024
1dc7181
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jun 11, 2024
3a9fc5d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 11, 2024
3e6019b
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jun 13, 2024
07b747b
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jun 14, 2024
a98480e
merging master branch in. also addressing reviews. the line aki menti…
puririshi98 Jun 24, 2024
9012176
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 24, 2024
0979a5c
final super minor cleanup to finish addressing nit
puririshi98 Jun 24, 2024
8958412
Merge branch 'gnn-llm-model-integration' of https://github.com/pyg-te…
puririshi98 Jun 24, 2024
43b1721
fixing my mistake in merging conflicts
puririshi98 Jun 24, 2024
c7f3fad
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 24, 2024
21d1896
fixing my mistake in merging conflicts
puririshi98 Jun 24, 2024
f4b7ee3
Merge branch 'gnn-llm-model-integration' of https://github.com/pyg-te…
puririshi98 Jun 24, 2024
be267e7
fixing my mistake in merging conflicts
puririshi98 Jun 24, 2024
89802e9
fixing my mistake in merging conflicts
puririshi98 Jun 24, 2024
8811260
fixing my mistake in merging conflicts
puririshi98 Jun 24, 2024
4fc5e59
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jun 24, 2024
757b63f
recent upstream sentencetransformer has issues, looking how to fix. r…
puririshi98 Jun 24, 2024
1ad0556
recent upstream sentencetransformer has issues, looking how to fix. r…
puririshi98 Jun 24, 2024
f81756e
fixed
puririshi98 Jun 24, 2024
5eb055a
handling flake8
puririshi98 Jun 25, 2024
7e84db8
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jun 25, 2024
49b2502
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 25, 2024
00fc6dd
Delete x.py
puririshi98 Jun 25, 2024
9bbfb64
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jun 25, 2024
348cf6a
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jun 25, 2024
bb818d6
precommit fix
puririshi98 Jun 25, 2024
f6d2a34
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 25, 2024
4743ee4
added unit testing for llm and gnn+llm
puririshi98 Jun 25, 2024
3a9befd
Merge branch 'gnn-llm-model-integration' of https://github.com/pyg-te…
puririshi98 Jun 25, 2024
30a2ccd
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 25, 2024
0c3dedf
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jun 25, 2024
cb27fe1
added unit testing for llm and gnn+llm
puririshi98 Jun 25, 2024
fedcf27
Merge branch 'gnn-llm-model-integration' of https://github.com/pyg-te…
puririshi98 Jun 25, 2024
0ee0362
lint clean
puririshi98 Jun 25, 2024
5a62f5c
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jun 25, 2024
996a797
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jun 26, 2024
dcd774a
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jun 26, 2024
857fdae
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jun 26, 2024
1f693eb
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jun 28, 2024
12efbf5
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 1, 2024
7215bc4
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jul 2, 2024
8392c88
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
d99c9ac
fixing issues caused by recent merge
puririshi98 Jul 2, 2024
1da5476
fixing issues caused by recent merge
puririshi98 Jul 2, 2024
aee71fd
fixing issues caused by recent merge
puririshi98 Jul 2, 2024
fc66cfd
fixing issues caused by recent merge
puririshi98 Jul 2, 2024
46dd763
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
186ce37
fixing issues caused by recent merge
puririshi98 Jul 2, 2024
2330d18
Merge branch 'gnn-llm-model-integration' of https://github.com/pyg-te…
puririshi98 Jul 2, 2024
a0e25c1
fixed issues. checking if bos_token makes any diff for g-retriever mi…
puririshi98 Jul 2, 2024
ea357c6
fixed issues. checking if bos_token makes any diff for g-retriever mi…
puririshi98 Jul 2, 2024
1647edd
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
00a2410
reverting, made no diff
puririshi98 Jul 2, 2024
0a85c3e
reverting, made no diff
puririshi98 Jul 2, 2024
d05b6b2
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
96c2877
reverting, made no diff
puririshi98 Jul 2, 2024
fe3342a
Merge branch 'gnn-llm-model-integration' of https://github.com/pyg-te…
puririshi98 Jul 2, 2024
c1e1b2f
breaking PR https://github.com/pyg-team/pytorch_geometric/pull/9167/ …
puririshi98 Jul 2, 2024
d8a72ed
Update CHANGELOG.md
puririshi98 Jul 2, 2024
10ed6e6
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
c204bc9
integration. Breaking down PR https://github.com/pyg-team/pytorch_ge…
puririshi98 Jul 2, 2024
d958410
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
6e9a750
changelog
puririshi98 Jul 2, 2024
b1c712b
Merge branch 'web-qsp-integ' of https://github.com/pyg-team/pytorch_g…
puririshi98 Jul 2, 2024
ae6befe
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
a877777
minor fix
puririshi98 Jul 2, 2024
cab1b4b
Merge branch 'web-qsp-integ' of https://github.com/pyg-team/pytorch_g…
puririshi98 Jul 2, 2024
c38eedf
cleanup
puririshi98 Jul 2, 2024
6de4caf
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
8e35f64
cleanup
puririshi98 Jul 2, 2024
8bb52eb
minor fix
puririshi98 Jul 2, 2024
5a2b9d1
cleanup
puririshi98 Jul 2, 2024
20ef4f2
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
4f4d2e5
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
9856171
warning to let people know that CPU LLMs can be prohibitively slow
puririshi98 Jul 2, 2024
081ac02
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
44f94c0
cleaning
puririshi98 Jul 2, 2024
72300b3
clean
puririshi98 Jul 2, 2024
d1d1a59
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
118dc09
quick fix
puririshi98 Jul 4, 2024
69eb5bf
Merge branch 'master' into web-qsp-integ
puririshi98 Jul 5, 2024
117cac2
Merge branch 'master' into add-g-retriever
puririshi98 Jul 5, 2024
11ea90e
Merge branch 'master' into gnn-llm-model-integration
puririshi98 Jul 5, 2024
2367f59
Merge branch 'master' into add-g-retriever
akihironitta Jul 7, 2024
5415bfc
Merge branch 'add-g-retriever' into web-qsp-integ
akihironitta Jul 7, 2024
a24c03e
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
akihironitta Jul 7, 2024
ba25c51
Merge branch 'master' into add-g-retriever
puririshi98 Jul 10, 2024
b160f5c
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 10, 2024
4e5872a
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 10, 2024
57da834
Modularizing LLM (G-retriever) code (#9502)
puririshi98 Jul 12, 2024
55f5235
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 12, 2024
1439e30
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 12, 2024
5b78603
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 19, 2024
b0d10f1
Merge branch 'master' into add-g-retriever
puririshi98 Jul 22, 2024
53a9bf8
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 22, 2024
c2e03fe
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 22, 2024
1da4f15
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 22, 2024
12c71c3
fix for bug
puririshi98 Jul 25, 2024
dae4eb0
Merge branch 'master' into add-g-retriever
puririshi98 Jul 25, 2024
1909e7d
accidentally deleted a line, putting it back
puririshi98 Jul 25, 2024
726c061
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 25, 2024
d04d9d2
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 25, 2024
68b6725
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 25, 2024
3a336fc
cleaning
puririshi98 Jul 25, 2024
0597ec0
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 25, 2024
e62bd16
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 25, 2024
9deaebb
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 25, 2024
78643c9
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 25, 2024
952c539
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 25, 2024
d407cbd
last minor fix
puririshi98 Jul 25, 2024
9112b58
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 25, 2024
c4c565c
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 25, 2024
03259ff
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 25, 2024
dd651be
hopefuly final minor fix from my rework
puririshi98 Jul 25, 2024
910bc26
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 25, 2024
a964f4c
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 25, 2024
1fe37a8
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 25, 2024
6d54d5a
fix docs, model selection
akihironitta Jul 26, 2024
a952948
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 29, 2024
3789f44
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 29, 2024
d340f04
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 29, 2024
31d8f2b
Update g_retriever.py
puririshi98 Jul 29, 2024
dc44a7d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 29, 2024
63340d8
Update g_retriever.py
puririshi98 Jul 29, 2024
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Update torch_geometric/nn/models/g_retriever.py
puririshi98 Jul 29, 2024
9bb6b07
Merge branch 'master' into add-g-retriever
puririshi98 Jul 29, 2024
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Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 29, 2024
e67a094
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 29, 2024
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Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 29, 2024
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[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 29, 2024
3f58f90
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 29, 2024
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noqa for bare except
puririshi98 Jul 29, 2024
41c5883
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 29, 2024
ce37ca5
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 29, 2024
7238400
removing unneeded noqa
puririshi98 Jul 29, 2024
c4d32eb
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 29, 2024
fe22334
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 29, 2024
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Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 29, 2024
b5074aa
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 29, 2024
99dd3e2
Merge branch 'master' into add-g-retriever
puririshi98 Jul 30, 2024
85f149b
Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Jul 30, 2024
631325f
Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Jul 30, 2024
228c222
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Jul 30, 2024
09de7d0
fix for recent changes intro-ing a typo
puririshi98 Aug 1, 2024
625b93e
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 1, 2024
30c5430
Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Aug 6, 2024
89efa75
Update test_g_retriever.py
puririshi98 Aug 16, 2024
6860770
removing unneeded requirement (only needed for larger multigpu llms)
puririshi98 Aug 16, 2024
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undoing
puririshi98 Aug 16, 2024
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undoing
puririshi98 Aug 16, 2024
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Merge branch 'master' into add-g-retriever
puririshi98 Aug 16, 2024
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Update CHANGELOG.md
puririshi98 Aug 16, 2024
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[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 16, 2024
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puririshi98 Aug 16, 2024
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puririshi98 Aug 16, 2024
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[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 16, 2024
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puririshi98 Aug 16, 2024
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puririshi98 Aug 16, 2024
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Update test_web_qsp_dataset.py
puririshi98 Aug 16, 2024
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[pre-commit.ci] auto fixes from pre-commit.com hooks
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puririshi98 Aug 16, 2024
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puririshi98 Aug 16, 2024
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Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Aug 16, 2024
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puririshi98 Aug 19, 2024
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Merge branch 'add-g-retriever' into web-qsp-integ
puririshi98 Aug 19, 2024
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puririshi98 Aug 19, 2024
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Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Aug 19, 2024
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Merge branch 'master' into add-g-retriever
puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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Merge branch 'web-qsp-integ' into gnn-llm-model-integration
puririshi98 Aug 27, 2024
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pre-commit-ci[bot] Aug 27, 2024
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Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Aug 27, 2024
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pre-commit-ci[bot] Aug 27, 2024
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adding typing to helper functions
puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 27, 2024
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puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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fix for typing CI checker
puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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puririshi98 Aug 27, 2024
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Merge branch 'gnn-llm-model-integration' into interactive-demo
puririshi98 Aug 27, 2024
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Delete test/datasets/test_web_qsp_dataset.py
puririshi98 Aug 27, 2024
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puririshi98 Aug 30, 2024
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puririshi98 Aug 30, 2024
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puririshi98 Sep 6, 2024
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puririshi98 Sep 6, 2024
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puririshi98 Sep 6, 2024
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puririshi98 Sep 6, 2024
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update
rusty1s Sep 10, 2024
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rusty1s Sep 10, 2024
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rusty1s Sep 10, 2024
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rusty1s Sep 10, 2024
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rusty1s Sep 10, 2024
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puririshi98 Sep 10, 2024
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puririshi98 Sep 10, 2024
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updating to accomodate matthias's changes
puririshi98 Sep 10, 2024
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updating to accomodate matthias's changes
puririshi98 Sep 10, 2024
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Merge branch 'gnn-llm-model-integration' of https://github.com/pyg-te…
puririshi98 Sep 10, 2024
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -7,6 +7,9 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).

### Added

- Added G-retriever interactive demo ([#9417](https://github.com/pyg-team/pytorch_geometric/pull/9417))
- Added `nn.models.GRetriever` ([#9167](https://github.com/pyg-team/pytorch_geometric/pull/9167))
- Added the `WebQSPDataset` dataset ([#9481](https://github.com/pyg-team/pytorch_geometric/pull/9481))
- Added the `GRetriever` model ([#9480](https://github.com/pyg-team/pytorch_geometric/pull/9480))
- Added the `ClusterPooling` layer ([#9627](https://github.com/pyg-team/pytorch_geometric/pull/9627))
- Added the `LinkPredMRR` metric ([#9632](https://github.com/pyg-team/pytorch_geometric/pull/9632))
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4 changes: 2 additions & 2 deletions examples/README.md
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Expand Up @@ -14,9 +14,9 @@ For examples on [Open Graph Benchmark](https://ogb.stanford.edu/) datasets, see
- [`ogbn_papers_100m.py`](./ogbn_papers_100m.py) is an example for training a GNN on the large-scale `ogbn-papers100m` dataset, containing approximately ~1.6B edges.
- [`ogbn_papers_100m_cugraph.py`](./ogbn_papers_100m_cugraph.py) shows how to accelerate the `ogbn-papers100m` workflow using [CuGraph](https://github.com/rapidsai/cugraph).

For examples on using `torch.compile`, see the examples under [`examples/compile`](./compile).
For examples on co-training LLM with GNN, see examples and README under [`examples/llm_plus_gnn`](./llm_plus_gnn).

For examples on scaling PyG up via multi-GPUs, see the examples under [`examples/multi_gpu`](./multi_gpu).
For examples on using `torch.compile`, see examples and README under [`examples/compile`](./compile).

For examples on working with heterogeneous data, see the examples under [`examples/hetero`](./hetero).

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6 changes: 6 additions & 0 deletions examples/llm_plus_gnn/README.md
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# Examples for LLM and GNN co-training

| Example | Description |
| ---------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------- |
| [`g_retriever.py`](./g_retriever.py) | Example for Retrieval-Augmented Generation (RAG) w/ GNN+LLM by co-training LLAMA2 with GAT for answering questions based on knowledge graph information |
| [`interactive_g_retriever_demo.py`](./interactive_g_retriever_demo.py) | Example of how to interact with a G Retriever model. |
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