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name: CI | ||
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on: | ||
push: | ||
branches: | ||
- main | ||
pull_request: | ||
branches: | ||
- main | ||
schedule: | ||
- cron: "0 5 * * TUE" | ||
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env: | ||
CACHE_NUMBER: 2 # Change this value to manually reset the environment cache | ||
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jobs: | ||
build: | ||
strategy: | ||
fail-fast: false | ||
max-parallel: 3 | ||
matrix: | ||
os: | ||
- ubuntu-latest | ||
- macos-latest | ||
# - windows-latest | ||
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runs-on: ${{ matrix.os }} | ||
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defaults: | ||
run: | ||
shell: bash -l {0} | ||
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steps: | ||
- uses: actions/checkout@v2 | ||
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- name: Setup micromamba | ||
uses: mamba-org/setup-micromamba@v1 | ||
with: | ||
micromamba-version: '1.5.9-1' | ||
environment-file: envs/environment.yaml | ||
log-level: debug | ||
init-shell: bash | ||
cache-environment: true | ||
cache-downloads: true | ||
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- name: Set cache dates | ||
run: | | ||
echo "WEEK=$(date +'%Y%U')" >> $GITHUB_ENV | ||
- name: Cache data and cutouts folders | ||
uses: actions/cache@v3 | ||
with: | ||
path: | | ||
data | ||
cutouts | ||
key: data-cutouts-${{ env.WEEK }}-${{ env.CACHE_NUMBER }} | ||
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- name: Conda list | ||
run: conda list | ||
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- name: Run Test | ||
run: make test | ||
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# - name: Test plotting and summaries | ||
# run: | | ||
# snakemake --cores all plot_all_p_nom | ||
# snakemake --cores all plot_all_summaries | ||
# snakemake --cores all make_all_summaries | ||
# rm -rf resources/*.nc resources/*.geojson resources/*.h5 networks results |
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