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74 Open 206 Closed
74 Open 206 Closed
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Issues list

sympy dependency issue: sympy<1.12,>=1.6
#598 opened Aug 14, 2024 by fbergmann
1
CI for Windows doesn't actually run any tests testing
#597 opened Jun 20, 2024 by jmuhlich
Fails to simulate an SBML model (Species does not have a compartment attribute!)
#592 opened Mar 12, 2024 by TorkelE
Exception: The program BioNetGen was not found in the default search path(s)
#578 opened Jul 3, 2023 by CNelias
2
test_bng_boolean_multiply_number fails with SymPy 1.12
#577 opened Jun 13, 2023 by himoto
4
SBML export annotations
#573 opened Mar 17, 2023 by pcarlip
1
Odd behavior when modeling second order reaction with one species
#572 opened Mar 13, 2023 by jadeshi
3
Add units to model parameters, expressions, species
#571 opened Jan 4, 2023 by ortega2247
4
Error at tutorial visualization step
#568 opened Sep 23, 2022 by lhdp0110
3
Problems with reactions where two monomers form another monomer VS two monomers form a dimer
#561 opened Jul 14, 2022 by Quim98
Model component concentration as an explicit function
#556 opened Dec 2, 2021 by melkonyan
1
top-level export function does not accept extra exporter-specific kwargs
#547 opened Jun 13, 2021 by jmuhlich
Annotation repr should reference Components by name
#535 opened Feb 11, 2021 by jmuhlich
Add support for explicit time in expressions feature
#534 opened Jan 20, 2021 by jmuhlich
1
pysb.importers.sbml.model_from_sbml returns error when loading SBML bug
#533 opened Jan 19, 2021 by devonjkohler
1
use threadpoolctl to manage openblas/mkl threading
#532 opened Jan 13, 2021 by jmuhlich
Expressions issue
#522 opened Oct 27, 2020 by Princeofthebow
5
ScipyOdeSimulator ignores use_analytic_jacobian (regression)
#519 opened Sep 30, 2020 by jmuhlich
1
Switch to tox for running tests
#517 opened Sep 17, 2020 by jmuhlich
"CupSodaSimulator doesn't support model with expression" error.
#515 opened Aug 13, 2020 by lmriccardo
6
State mapping in reaction rules?
#501 opened May 11, 2020 by dweindl
8
Incorrect binding with catalyze_complex macro on dimer substrate bug
#498 opened Apr 8, 2020 by alubbock
Undeclared dependencies can slip through testing
#497 opened Apr 3, 2020 by jmuhlich
dateutil.parser import at top level, but python-dateutil not in requirements
#496 opened Apr 3, 2020 by jmuhlich
Python version support policy
#463 opened Sep 23, 2019 by jmuhlich
2
ProTip! Find all open issues with in progress development work with linked:pr.