update tests

qbic-pipelines · Jan 9, 2025 · 247a564 · 247a564
1 parent e7701bd
commit 247a564
Show file tree

Hide file tree

Showing 3 changed files with 16 additions and 15 deletions.
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
@@ -13,7 +13,7 @@
                     "vcf2counts.R": "1.0.0"
                 },
                 "Workflow": {
-                    "qbic-pipelines/vcftomat": "v1.1.0"
+                    "qbic-pipelines/vcftomat": "v1.2.0dev"
                 }
             },
             [
@@ -46,7 +46,7 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.2"
         },
-        "timestamp": "2024-12-20T12:10:59.547851"
+        "timestamp": "2025-01-09T10:55:20.453804"
     },
     "Params: default": {
         "content": [
@@ -62,7 +62,7 @@
                     "vcf2counts.R": "1.0.0"
                 },
                 "Workflow": {
-                    "qbic-pipelines/vcftomat": "v1.1.0"
+                    "qbic-pipelines/vcftomat": "v1.2.0dev"
                 }
             },
             [
@@ -99,6 +99,6 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.2"
         },
-        "timestamp": "2024-12-20T12:10:25.903469"
+        "timestamp": "2025-01-09T10:55:08.64312"
     }
-}
+}
diff --git a/tests/full.nf.test.snap b/tests/full.nf.test.snap
@@ -22,7 +22,7 @@
                     "vcf2counts.R": "1.0.0"
                 },
                 "Workflow": {
-                    "qbic-pipelines/vcftomat": "v1.1.0"
+                    "qbic-pipelines/vcftomat": "v1.2.0dev"
                 }
             },
             [
@@ -102,7 +102,7 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.2"
         },
-        "timestamp": "2024-12-20T12:11:20.624762"
+        "timestamp": "2025-01-09T10:59:04.05024"
     },
     "Params: default | input full-size - stub": {
         "content": [
@@ -127,7 +127,7 @@
                     "vcf2counts.R": "1.0.0"
                 },
                 "Workflow": {
-                    "qbic-pipelines/vcftomat": "v1.1.0"
+                    "qbic-pipelines/vcftomat": "v1.2.0dev"
                 }
             },
             [
@@ -210,6 +210,6 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.2"
         },
-        "timestamp": "2024-12-20T12:12:11.055567"
+        "timestamp": "2025-01-09T10:59:45.411517"
     }
-}
+}
diff --git a/tests/nextflow.config b/tests/nextflow.config
@@ -17,13 +17,14 @@ params {
 
 // Impose sensible resource limits for testing
 process {
-    withName: '.*' {
-        cpus   = 2
-        memory = 3.GB
-        time   = 2.h
-    }
+   withName: '.*' {
+       cpus   = 2
+       memory = 3.GB
+       time   = 2.h
+   }
 }
 
+
 // Impose same minimum Nextflow version as the pipeline for testing
 manifest {
     nextflowVersion = '!>=24.04.2'