fix issues introduced by git cherry pick

src/main/java/life/qbic/io/commandline/CommandLineOptions.java

@@ -8,8 +8,8 @@
 
 // main command with format specifiers for the usage help message
 @Command(name = "openbis-scripts",
-        subcommands = { SampleHierarchyCommand.class, FindDatasetsCommand.class, DownloadPetabCommand.class,
-            UploadPetabResultCommand.class, UploadDatasetCommand.class, SpaceStatisticsCommand.class },
+        subcommands = { SampleHierarchyCommand.class, FindDatasetsCommand.class,
+            UploadDatasetCommand.class, SpaceStatisticsCommand.class },
         description = "A client software for querying openBIS.",
         mixinStandardHelpOptions = true, versionProvider = ManifestVersionProvider.class)
 public class CommandLineOptions {

src/main/java/life/qbic/model/download/FileSystemWriter.java

@@ -14,7 +14,7 @@
  *
  * @author: Sven Fillinger, Andreas Friedrich
  */
-public class FileSystemWriter implements ModelReporter {
+public class FileSystemWriter implements SummaryWriter {
 
   /**
    * File that stores the summary report content for valid checksums.

src/main/java/life/qbic/model/download/ModelReporter.java → src/main/java/life/qbic/model/download/SummaryWriter.java

@@ -1,11 +1,9 @@
 package life.qbic.model.download;
 
 import java.io.IOException;
-import java.net.URL;
-import java.nio.file.Path;
 import java.util.List;
 
-public interface ModelReporter {
+public interface SummaryWriter {
 
   void reportSummary(List<String> summary) throws IOException;
 }