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MAINT: removes old classifier URLs that are no longer being used #155

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merged 3 commits into from
Jun 26, 2024
Merged

MAINT: removes old classifier URLs that are no longer being used #155

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7474df7
MAINT: removes old classifier URLs that are no longer being used
lizgehret Jun 26, 2024
c55aeb9
moves sepp ref DBs
lizgehret Jun 26, 2024
4956601
add old tutorial refs so this can be merged now
lizgehret Jun 26, 2024
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30 changes: 0 additions & 30 deletions urls/_2024.py
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Original file line number Diff line number Diff line change
Expand Up @@ -283,18 +283,6 @@

# 2024.5

# these are only used in the deprecated resources page
'2024.5/common/sepp-refs-silva-128.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.5/common/sepp-refs-silva-128.qza',
'2024.5/common/silva-138-99-seqs-515-806.qza':
'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.5/common/silva-138-99-seqs-515-806.qza',
'2024.5/common/silva-138-99-seqs.qza':
'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.5/common/silva-138-99-seqs.qza',
'2024.5/common/silva-138-99-tax-515-806.qza':
'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.5/common/silva-138-99-tax-515-806.qza',
'2024.5/common/silva-138-99-tax.qza':
'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.5/common/silva-138-99-tax.qza',

# these are used in tutorials
'2024.5/common/gg-13-8-99-515-806-nb-classifier.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.5/common/gg-13-8-99-515-806-nb-classifier.qza',
Expand Down Expand Up @@ -506,24 +494,6 @@

# 2024.10

# these are only used in the deprecated resources page
'2024.10/common/sepp-refs-silva-128.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.10/common/sepp-refs-silva-128.qza',
'2024.10/common/silva-138-99-seqs-515-806.qza':
'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.10/common/silva-138-99-seqs-515-806.qza',
'2024.10/common/silva-138-99-seqs.qza':
'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.10/common/silva-138-99-seqs.qza',
'2024.10/common/silva-138-99-tax-515-806.qza':
'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.10/common/silva-138-99-tax-515-806.qza',
'2024.10/common/silva-138-99-tax.qza':
'https://qiime2-data.s3-us-west-2.amazonaws.com/2024.10/common/silva-138-99-tax.qza',

# these are used in tutorials
'2024.10/common/gg-13-8-99-515-806-nb-classifier.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.10/common/gg-13-8-99-515-806-nb-classifier.qza',
'2024.10/common/sepp-refs-gg-13-8.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.10/common/sepp-refs-gg-13-8.qza',

'2024.10/tutorials/atacama-soils/10p/barcodes.fastq.gz':
'https://s3-us-west-2.amazonaws.com/qiime2-data/2024.10/tutorials/atacama-soils/10p/barcodes.fastq.gz',
'2024.10/tutorials/atacama-soils/10p/forward.fastq.gz':
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12 changes: 12 additions & 0 deletions urls/_classifiers.py
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Expand Up @@ -9,6 +9,14 @@
# flake8: noqa

MAP_CLASSIFIERS = {
# sklearn 0.21.2

# SEPP reference databases
'classifiers/sklearn-0.21.2/sepp-ref-dbs/sepp-refs-gg-13-8.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/classifiers/sklearn-0.21.2/sepp-ref-dbs/sepp-refs-gg-13-8.qza',
'classifiers/sklearn-0.21.2/sepp-ref-dbs/sepp-refs-silva-128.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/classifiers/sklearn-0.21.2/sepp-ref-dbs/sepp-refs-silva-128.qza',

# sklearn 0.24.1

# Greengenes
Expand All @@ -25,6 +33,10 @@

# sklearn 1.4.2

# Greengenes
'classifiers/sklearn-1.4.2/greengenes/gg-13-8-99-515-806-nb-classifier.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/classifiers/sklearn-1.4.2/greengenes/gg-13-8-99-515-806-nb-classifier.qza',

# Greengenes 2
'classifiers/sklearn-1.4.2/greengenes2/2022.10.backbone.full-length.nb.sklearn-1.4.2.qza':
'https://s3-us-west-2.amazonaws.com/qiime2-data/classifiers/sklearn-1.4.2/greengenes2/2022.10.backbone.full-length.nb.sklearn-1.4.2.qza',
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