q2-fmt-2024.11.0-beta

This is q2-fmt's official Beta Release!
Here we present all the methods needed for assessing engraftment extent following FMT. 🎉

New Actions include:

1. PEDF (Proportional Engraftment of Donor Features)
2. PEDF-permutation-test
3. PPRF (Proportion of Persistent Recipient Features)
4. PRDF (Proportion of Recipients with Donor Features)
5. Detect-donor-indicators
6. a heatmap Visualization!

For more info be sure to checkout our offical tutorial! https://q2-fmt.readthedocs.io/en/latest/intro.html
If you have any questions please reach out on the q2-forum! https://forum.qiime2.org/

What's Changed

• NEW: PEDS method, Heatmap VIZ and Associated Unit tests by @cherman2 in #39
• NEW: refactor for sample peds for implementation of Feature peds by @cherman2 in #48
• REF: Refactoring peds-heatmap and the peds pipeline to split taxonomic labels by @cherman2 in #68
• Update: q2-fmt to py3.9 by @cherman2 in #76
• REF: group-timepoints/engraftment pipeline take to_baseline param by @cherman2 in #71
• REF: Adds 4th dimension of Sample_Size to Heatmap by @cherman2 in #79
• REF: group-timepoints to create Dist1D[nestedOrdered] by @cherman2 in #78
• REF: Add choices to to_distance parameter by @cherman2 in #83
• NEW: Added command descriptions to q2-fmt command by @cherman2 in #75
• REF: engraftment to CC by @cherman2 in #88
• NEW: peds-simulation action by @cherman2 in #58
• BUG: Fixes bug were fdr correction was handed an float instead of a list. by @cherman2 in #90
• REF: Add more bumpers and tests to cc --to-baseline by @cherman2 in #89
• REF: minor fixes from working with Jeff by @cherman2 in #91
• REF: q2-fmt ci by @cherman2 in #92
• NEW: goodies for library by @cherman2 in #98
• NEW: PPRS action by @cherman2 in #86
• REF: q2-fmt tutorial fixes by @cherman2 in #99
• BUG: title is metadata.index.name by @cherman2 in #102
• Reformat for new library spec by @Oddant1 in #103
• REF: updates to be compatible with q2-stats by @cherman2 in #104
• add content for readthedocs builds by @gregcaporaso in #105
• add templated Jupyter Book by @gregcaporaso in #106
• ADD: detect donor indicators pipeline by @cherman2 in #109
• REF: PEDs/PEDS Associated Methods by @cherman2 in #101
• Reformat example data away from frictionless by @ebolyen in #110
• creating q2-Fmt tutorial by @cherman2 in #107
• MAINT: Rename sample-peds, feature-peds, pprs and peds-simulation by @cherman2 in #111
• fixes q2-fmt tutorial by @cherman2 in #112
• Update _config.yml by @cherman2 in #113

Full Changelog: 2023.5.0...2024.11