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Merge pull request #45 from Jonas-Verhellen/patch-1
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Update paperlist.yml
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jbmouret authored Jul 25, 2024
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papers:

- abstract: 'In recent years, there have been considerable academic and industrial
research efforts to develop novel generative models for high-performing, small molecules.
Traditional, rules-based algorithms such as genetic algorithms [Jensen, Chem. Sci., 2019,
12, 3567-3572] have, however, been shown to rival deep learning approaches in terms of both
efficiency and potency. In previous work, we showed that the addition of a quality-diversity
archive to a genetic algorithm resolves stagnation issues and substantially increases search
efficiency [Verhellen, Chem. Sci., 2020, 42, 11485-11491]. In this work, we expand on these insights
and leverage the availability of bespoke kernels for small molecules [Griffiths, Adv. Neural. Inf.
Process. Syst., 2024, 36] to integrate Bayesian optimisation into the quality-diversity process.
This novel generative model, which we call Bayesian Illumination, produces a larger diversity of
high-performing molecules than standard quality-diversity optimisation methods. In addition,
we show that Bayesian Illumination further improves search efficiency com- pared to previous
generative models for small molecules, including deep learning approaches, genetic algorithms,
and standard quality-diversity methods.'
authors:
- Jonas Verhellen
bibtex: "@article{Samvelyan2024Rainbow,\n\ttitle={Bayesian Illumination: Inference and
\ Quality-Diversity Accelerate Generative Molecular Models},\n\tauthor={Verhellen,
\ Jonas},\n\tyear={2024} }"
pdfurl: https://chemrxiv.org/engage/chemrxiv/article-details/667c2bdd5101a2ffa88fae63
title: "Bayesian Illumination: Inference and Quality-Diversity Accelerate Generative Molecular Models"
year: 2024

- abstract: 'As large language models (LLMs) become increasingly prevalent across
many
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