Merge pull request #206 from r-causal/reorg-chapters

r-causal · Nov 24, 2023 · 520b62a · 520b62a
2 parents fd2726a + 25af4d0
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diff --git a/_quarto.yml b/_quarto.yml
@@ -31,38 +31,38 @@ book:
 
     - part: Asking Causal Questions
       chapters: 
-      - chapters/chapter-01.qmd
-      - chapters/chapter-02.qmd
-      - chapters/chapter-03.qmd
-      - chapters/chapter-04.qmd
-      - chapters/chapter-05.qmd
-      - chapters/chapter-06.qmd
+      - chapters/01-causal-question.qmd
+      - chapters/02-whole-game.qmd
+      - chapters/03-counterfactuals.qmd
+      - chapters/04-target-trials-std-methods.qmd
+      - chapters/05-dags.qmd
+      - chapters/06-not-just-a-stats-problem.qmd
 
     - part: The Design Phase 
       chapters: 
-      - chapters/chapter-07.qmd
-      - chapters/chapter-08.qmd
-      - chapters/chapter-09.qmd
-      - chapters/chapter-10.qmd
+      - chapters/07-prep-data.qmd
+      - chapters/08-building-ps-models.qmd
+      - chapters/09-using-ps.qmd
+      - chapters/10-evaluating-ps.qmd
 
     - part: Estimating Causal Effects 
       chapters: 
-      - chapters/chapter-11.qmd
-      - chapters/chapter-12.qmd
-      - chapters/chapter-13.qmd
-      - chapters/chapter-14.qmd
-      - chapters/chapter-15.qmd
-      - chapters/chapter-16.qmd
-      - chapters/chapter-17.qmd
-      - chapters/chapter-18.qmd
-      - chapters/chapter-19.qmd
-      - chapters/chapter-20.qmd
-      - chapters/chapter-21.qmd
-      - chapters/chapter-22.qmd
-      - chapters/chapter-23.qmd
-      - chapters/chapter-24.qmd
+      - chapters/11-estimands.qmd
+      - chapters/12-outcome-model.qmd
+      - chapters/13-continuous-exposures.qmd
+      - chapters/14-categorical-exposures.qmd
+      - chapters/15-g-comp.qmd
+      - chapters/16-interaction.qmd
+      - chapters/17-missingness.qmd
+      - chapters/18-longitudinal.qmd
+      - chapters/19-survival.qmd
+      - chapters/20-mediation.qmd
+      - chapters/21-sensitivity.qmd
+      - chapters/22-machine-learning.qmd
+      - chapters/23-iv-and-friends.qmd
+      - chapters/24-evidence.qmd
 
-    - chapters/references-99.qmd
+    - chapters/99-references.qmd
 
 bibliography: citations.bib
 

diff --git a/chapters/chapter-01.qmd → chapters/01-causal-question.qmd b/chapters/chapter-01.qmd → chapters/01-causal-question.qmd
diff --git a/chapters/chapter-02.qmd → chapters/02-whole-game.qmd b/chapters/chapter-02.qmd → chapters/02-whole-game.qmd
diff --git a/chapters/chapter-03.qmd → chapters/03-counterfactuals.qmd b/chapters/chapter-03.qmd → chapters/03-counterfactuals.qmd
diff --git a/chapters/chapter-04.qmd → chapters/04-target-trials-std-methods.qmd b/chapters/chapter-04.qmd → chapters/04-target-trials-std-methods.qmd
@@ -1,4 +1,4 @@
-# Target Trials and Standard Methods {#sec-trials-std}
+# Target trials and standard methods {#sec-trials-std}
 
 {{< include 00-setup.qmd >}}
 

diff --git a/chapters/chapter-05.qmd → chapters/05-dags.qmd b/chapters/chapter-05.qmd → chapters/05-dags.qmd
diff --git a/chapters/chapter-06.qmd → chapters/06-not-just-a-stats-problem.qmd b/chapters/chapter-06.qmd → chapters/06-not-just-a-stats-problem.qmd
@@ -1,4 +1,4 @@
-# Causal Inference is not (just) a statistical problem {#sec-quartets}
+# Causal inference is not (just) a statistical problem {#sec-quartets}
 
 {{< include 00-setup.qmd >}}
 

diff --git a/chapters/chapter-07.qmd → chapters/07-prep-data.qmd b/chapters/chapter-07.qmd → chapters/07-prep-data.qmd
diff --git a/chapters/chapter-08.qmd → chapters/08-building-ps-models.qmd b/chapters/chapter-08.qmd → chapters/08-building-ps-models.qmd
diff --git a/chapters/chapter-09.qmd → chapters/09-using-ps.qmd b/chapters/chapter-09.qmd → chapters/09-using-ps.qmd
diff --git a/chapters/chapter-10.qmd → chapters/10-evaluating-ps.qmd b/chapters/chapter-10.qmd → chapters/10-evaluating-ps.qmd
diff --git a/chapters/chapter-11.qmd → chapters/11-estimands.qmd b/chapters/chapter-11.qmd → chapters/11-estimands.qmd
diff --git a/chapters/chapter-12.qmd → chapters/12-outcome-model.qmd b/chapters/chapter-12.qmd → chapters/12-outcome-model.qmd
diff --git a/chapters/chapter-13.qmd → chapters/13-continuous-exposures.qmd b/chapters/chapter-13.qmd → chapters/13-continuous-exposures.qmd
diff --git a/chapters/chapter-14.qmd → chapters/14-categorical-exposures.qmd b/chapters/chapter-14.qmd → chapters/14-categorical-exposures.qmd
diff --git a/chapters/chapter-15.qmd → chapters/15-g-comp.qmd b/chapters/chapter-15.qmd → chapters/15-g-comp.qmd
@@ -1,4 +1,4 @@
-# G-Computation {#sec-g-comp}
+# G-computation {#sec-g-comp}
 
 {{< include 00-setup.qmd >}}
 

diff --git a/chapters/chapter-16.qmd → chapters/16-interaction.qmd b/chapters/chapter-16.qmd → chapters/16-interaction.qmd
diff --git a/chapters/chapter-17.qmd → chapters/17-missingness.qmd b/chapters/chapter-17.qmd → chapters/17-missingness.qmd
diff --git a/chapters/chapter-18.qmd → chapters/18-longitudinal.qmd b/chapters/chapter-18.qmd → chapters/18-longitudinal.qmd
diff --git a/chapters/chapter-19.qmd → chapters/19-survival.qmd b/chapters/chapter-19.qmd → chapters/19-survival.qmd
diff --git a/chapters/chapter-20.qmd → chapters/20-mediation.qmd b/chapters/chapter-20.qmd → chapters/20-mediation.qmd
diff --git a/chapters/chapter-21.qmd → chapters/21-sensitivity.qmd b/chapters/chapter-21.qmd → chapters/21-sensitivity.qmd
diff --git a/chapters/chapter-22.qmd → chapters/22-machine-learning.qmd b/chapters/chapter-22.qmd → chapters/22-machine-learning.qmd
@@ -1,4 +1,4 @@
-# Machine Learning and Causal Inference {#sec-causal-ml}
+# Machine learning and causal inference {#sec-causal-ml}
 
 {{< include 00-setup.qmd >}}
 

diff --git a/chapters/chapter-23.qmd → chapters/23-iv-and-friends.qmd b/chapters/chapter-23.qmd → chapters/23-iv-and-friends.qmd
diff --git a/chapters/24-evidence.qmd b/chapters/24-evidence.qmd
@@ -0,0 +1,16 @@
+# Evidence {#sec-evidence}
+
+{{< include 00-setup.qmd >}}
+
+> "Circumstantial evidence is a very tricky thing. It may seem to point very straight to one thing, but if you shift your own point of view a little, you may find it pointing in an equally uncompromising manner to something entirely different”
+> --- Sherlock Holmes
+
+## Triangulation
+
+```{r}
+rnorm(5)
+```
+
+## Generalization and transportability
+
+## Ragged evidence
diff --git a/chapters/references-99.qmd → chapters/99-references.qmd b/chapters/references-99.qmd → chapters/99-references.qmd
diff --git a/chapters/chapter-24.qmd b/chapters/chapter-24.qmd