test(various): Added tests. #80
Workflow file for this run
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| # This workflow is purely to determine code coverage. | |
| # Since there were issues with the pinned version of older versions of ISIS | |
| # and we really only need to run coverage once (not N times for every combination | |
| # in a test matrix), there is some duplication with the primary testing workflow. | |
| name: Code Coverage | |
| on: [push] | |
| env: | |
| isis-data: /test-resources/ISISDATA/ | |
| jobs: | |
| coverage: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Conda setup | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: false | |
| channel-priority: flexible | |
| channels: usgs-astrogeology, conda-forge | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Install ISIS | |
| run: | | |
| micromamba create --name isis | |
| micromamba activate isis | |
| micromamba install -y isis=7.2.0 | |
| - name: Setup test-resources/ | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/test-resources/ | |
| - name: Download IMG | |
| run: curl "https://hirise-pds.lpl.arizona.edu/PDS/EDR/PSP/ORB_010500_010599/PSP_010502_2090/PSP_010502_2090_RED5_0.IMG" -o $GITHUB_WORKSPACE/test-resources/PSP_010502_2090_RED5_0.img | |
| - name: Set up kalasiris testing env | |
| run: | | |
| micromamba create --name kal | |
| micromamba activate kal | |
| python -m pip install -e . | |
| - name: Test with pytest and generate coverage report | |
| run: | | |
| micromamba activate kal | |
| micromamba install -y pytest | |
| micromamba install -y pytest-cov | |
| export ISISROOT=$MAMBA_ROOT_PREFIX/envs/isis | |
| export ISISDATA=$MAMBA_ROOT_PREFIX/envs/isis | |
| pytest --cov=./kalasiris --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: true |