test(code-cover.yml): I really need to watch this syntax closer. #84
Workflow file for this run
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# This workflow is purely to determine code coverage. | |
# Since there were issues with the pinned version of older versions of ISIS | |
# and we really only need to run coverage once (not N times for every combination | |
# in a test matrix), there is some duplication with the primary testing workflow. | |
name: Code Coverage | |
on: [push] | |
env: | |
isis-data: /test-resources/ISISDATA/ | |
jobs: | |
coverage: | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Conda setup | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: isis | |
create-args: >- | |
isis=8.0.3 | |
condarc: | | |
channels: | |
- usgs-astrogeology | |
- conda-forge | |
channel-priority: flexible | |
- name: Checkout | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
- name: Setup test-resources/ | |
run: | | |
mkdir $GITHUB_WORKSPACE/test-resources/ | |
- name: Download IMG | |
run: curl "https://hirise-pds.lpl.arizona.edu/PDS/EDR/PSP/ORB_010500_010599/PSP_010502_2090/PSP_010502_2090_RED5_0.IMG" -o $GITHUB_WORKSPACE/test-resources/PSP_010502_2090_RED5_0.img | |
- name: Install kalasiris | |
run: pip install -e . | |
- name: Test with pytest and generate coverage report | |
run: | | |
micromamba install -y pytest | |
micromamba install -y pytest-cov | |
export ISISROOT=$MAMBA_ROOT_PREFIX/envs/isis | |
export ISISDATA=$MAMBA_ROOT_PREFIX/envs/isis | |
pytest --cov=./kalasiris --cov-report=xml | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
with: | |
verbse: true | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |