REANA-Client 0.9.3

0.9.3 (2024-03-13)

Build

• appimage: upgrade to Python 3.8.18 (#704) (783c17a)

Bug fixes

• status: display correct duration of stopped workflows (#701) (b53def8), closes #699

Code refactoring

• docs: move from reST to Markdown (#703) (c9c4d53)

Code style

• black: format with black v24 (#702) (02dc830)

Test suite

• snakemake: allow running Snakemake 7 tests on Python 3.11+ (#700) (8ad7ff1), closes #655

Continuous integration

• commitlint: addition of commit message linter (#695) (2de7d61)
• commitlint: allow release commit style (#708) (f552752)
• commitlint: check for the presence of concrete PR number (#698) (fa5b7c7)
• pytest: install tests package variant instead of all (#703) (fe0b00a)
• release-please: initial configuration (#695) (5b278f1)
• shellcheck: fix exit code propagation (#698) (fe696ea)

Documentation

• authors: complete list of contributors (#705) (875997c)

REANA-Client 0.9.2

• Changes validate command to show detailed errors when the specification file is not a valid YAML file.
• Changes the validation of specification files to show improved validation warnings, which also indicate where unexpected properties are located in the file.
• Fixes create_workflow_from_json API function to always load and send the workflow specification to the server.
• Fixes list command to accept case-insensitive column names when sorting the returned workflow runs via the --sort option.
• Fixes run wrapper command for workflows that do not contain inputs clause in their specification.

REANA-Client 0.9.1

• Adds support for Python 3.12.
• Adds prune command to delete all intermediate files of a given workflow. Use with care.
• Changes open command to inform user about the auto-closure of interactive sessions after a certain inactivity timeout.
• Changes validate command to display non-critical validation warnings when checking the REANA specification file.
• Fixes list command to correctly list workflows when sorting them by their run number or by the size of their workspace.
• Fixes du command help message typo.
• Fixes validation --environments command to correctly handle fully-qualified image names.

REANA-Client 0.9.0

• Adds support for Python 3.11.
• Adds support for .gitignore and .reanaignore to specify files that should not be uploaded to REANA.
• Adds retention-rules-list command to list the retention rules of a workflow.
• Changes REANA specification loading and validation functionalities by porting some of the logic to reana-commons.
• Changes create and restart commands to always upload the REANA specification file.
• Changes delete command to always delete the workflow's workspace.
• Changes delete_workflow Python API function to always delete the workflow's workspace.
• Changes download command to add the possibility to write files to the standard output via -o - option.
• Changes list command to hide deleted workflows by default.
• Changes list command to allow displaying deleted workflows via --all and --show-deleted-runs options.
• Changes list and status commands to allow displaying the duration of workflows with the --include-duration option.
• Changes mv command to allow moving files while a workflow is running.
• Changes upload command to prevent uploading symlinks.
• Changes validation --environment command to use Docker registry v2 APIs to check that a Docker image exists in DockerHub.
• Fixes list command to highlight the workflow specified in REANA_WORKON correctly.
• Fixes secrets-delete command error message when deleting non existing secrets.
• Fixes start command to report failed workflows as errors.
• Fixes start and run commands to correctly follow the execution of the workflow until termination.
• Fixes status command to respect output format provided by the --format option.
• Fixes upload command to report when input directories are listed under the files section in the REANA specification file and vice versa.
• Fixes validate --environment command to detect illegal whitespace characters in Docker image names.

REANA-Client 0.8.1

• Adds support for creating reana-client standalone AppImage executables.
• Adds support for Python 3.10.
• Adds workflow name validation for create_workflow_from_json() Python API function.
• Fixes formatting of error messages and sets appropriate exit status codes.

REANA-Client 0.8.0

• Adds support for running and validating Snakemake workflows.
• Adds support for outputs.directories in reana.yaml allowing to easily download output directories.
• Adds new command quota-show to retrieve information about total CPU and Disk usage and quota limits.
• Adds new command info that retrieves general information about the cluster, such as available workspace path settings.
• Changes validate command to add the possibility to check the workflow against server capabilities such as desired workspace path via --server-capabilities option.
• Changes list command to add the possibility to filter by workflow status and search by workflow name via --filter option.
• Changes list command to add the possibility to filter and display all the runs of a given workflow via -w option.
• Changes list command to stop including workflow progress and workspace size by default. Please use new options --include-progress and --include-workspace-size to show this information.
• Changes list --sessions command to display the status of interactive sessions.
• Changes logs command to display also the start and finish times of individual jobs.
• Changes ls command to add the possibility to filter by file name, size and last-modified values via --filter option.
• Changes du command to add the possibility filter by file name and size via --filter option.
• Changes delete command to prevent hard-deletion of workflows.
• Changes Yadage workflow specification loading to be done in reana-commons.
• Changes CWL workflow engine to cwltool version 3.1.20210628163208.
• Removes support for Python 2.7. Please use Python 3.6 or higher from now on.

REANA-Client 0.7.5

• Changes workflow validation to display more granular output.
• Changes workflow parameters validation to warn about misused parameters for each step.
• Changes dependencies to unpin six so that client may be installed in more contexts.
• Fixes environment image validation not to test repetitively the same image.
• Fixes upload_to_server() Python API function to silently skip uploading in case of none-like inputs.

REANA-Client 0.7.4

• Fixes environment image validation info message where UIDs were switched.
• Changes list command to include deleted workflows by default.
• Adds support for wildcard patterns to ls command.
• Adds support for directory download and wildcard patterns to download command.

REANA-Client 0.7.3

• Adds validation of workflow input parameters to the validate command.
• Adds optional validation of workflow environment images (--environments) to the validate command.

REANA-Client 0.7.2

• Adds support for Python 3.9.
• Fixes exception handling when uploading files.
• Fixes minor code warnings.
• Fixes trailing slash issue from user exported REANA_SERVER_URL.