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optimize loss computation for scperturb #42

Merged
merged 6 commits into from
May 13, 2024
Merged

optimize loss computation for scperturb #42

merged 6 commits into from
May 13, 2024

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safiyecelik
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@safiyecelik safiyecelik commented May 12, 2024 •
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What?

  • improve code efficiency of scperturb analysis by precomputing and caching the perturbed gene data.

Why?

  • it was super-slow when there were too many perturbed genes like Replogle et al. dataset

@nathanlazar nathanlazar merged commit 356610f into trunk May 13, 2024
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@nathanlazar nathanlazar deleted the optimize_scperturb_code branch May 13, 2024 16:40
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@nathanlazar nathanlazar nathanlazar approved these changes

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@safiyecelik @nathanlazar