GitHub - reginakim/BRAINSTools: A suite of tools for medical image processing focused on brain analysis

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A suite of tools for medical image processing focused on brain analysis

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Name		Name	Last commit message	Last commit date
Latest commit History 1,284 Commits
AutoWorkup		AutoWorkup
BRAINSABC		BRAINSABC
BRAINSCommonLib		BRAINSCommonLib
BRAINSConstellationDetector		BRAINSConstellationDetector
BRAINSContinuousClass		BRAINSContinuousClass
BRAINSCreateLabelMapFromProbabilityMaps		BRAINSCreateLabelMapFromProbabilityMaps
BRAINSCut		BRAINSCut
BRAINSDemonWarp		BRAINSDemonWarp
BRAINSFit		BRAINSFit
BRAINSInitializedControlPoints		BRAINSInitializedControlPoints
BRAINSLandmarkInitializer		BRAINSLandmarkInitializer
BRAINSMultiModeSegment		BRAINSMultiModeSegment
BRAINSMultiSTAPLE		BRAINSMultiSTAPLE
BRAINSMush		BRAINSMush
BRAINSPosteriorToContinuousClass		BRAINSPosteriorToContinuousClass
BRAINSROIAuto		BRAINSROIAuto
BRAINSResample		BRAINSResample
BRAINSSnapShotWriter		BRAINSSnapShotWriter
BRAINSSurfaceTools		BRAINSSurfaceTools
BRAINSTransformConvert		BRAINSTransformConvert
CMake		CMake
CMakeFiles		CMakeFiles
ConvertBetweenFileFormats		ConvertBetweenFileFormats
DWIConvert		DWIConvert
DebugImageViewer		DebugImageViewer
GTRACT		GTRACT
ICCDEF		ICCDEF
ImageCalculator		ImageCalculator
SuperBuild		SuperBuild
TestData		TestData
Utilities		Utilities
.gitignore		.gitignore
BRAINSTools.cmake		BRAINSTools.cmake
CMakeLists.txt		CMakeLists.txt
CTestConfig.cmake		CTestConfig.cmake
Common.cmake		Common.cmake
README		README
SuperBuild.cmake		SuperBuild.cmake

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The BRAINSTools is a harness to assist in building the many
BRAINSTools under development.

Developers should run the "./Utilities/SetupForDevelopment.sh" script to get started.


Example session for a clean build:
mkdir ~/src/mytester
cd ~/src/mytester
git clone git://github.com/BRAINSia/BRAINSTools.git
cd BRAINSTools/
bash ./Utilities/SetupForDevelopment.sh
mkdir -p ../BRAINSTools-build
cd ../BRAINSTools-build/
CC=/usr/bin/gcc-4.2 CXX=/usr/bin/g++-4.2 ccmake ../BRAINSTools -DUSE_BRAINSFit:BOOL=ON -DUSE_BRAINSConstellationDetector:BOOL=ON -DUSE_BRAINSABC:BOOL=ON
make -j24 -k ; ## NOTE:  The fetching of data still has problems with parallel builds, so we need to restart it a efw times
make
make
make