clean up and refactor of pyremo.preproc
#427
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI with extensions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| # Bookend python versions | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set environment variables | |
| run: | | |
| echo "CONDA_ENV_FILE=ci/requirements/environment.yml" >> $GITHUB_ENV | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Create conda environment | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| cache-downloads: true | |
| cache-downloads-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| micromamba-version: 'latest' | |
| environment-file: ci/requirements/environment.yml | |
| extra-specs: | | |
| python=${{ matrix.python-version }} | |
| - name: Install pyremo | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Install private dependencies | |
| run: | | |
| python -m pip install git+https://bot:${{secrets.DKRZ_PYINTORG_TOKEN}}@gitlab.dkrz.de/remo/pyintorg.git # use master now @v0.2.0a1 | |
| python -m pip install git+https://bot:${{secrets.DKRZ_PYDRUINT_TOKEN}}@gitlab.dkrz.de/remo/[email protected] | |
| - name: Version info | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Import pyremo | |
| run: | | |
| python -c "import pyremo" | |
| - name: Run tests | |
| timeout-minutes: 5 | |
| run: python -u -m pytest | |
| --cov=pyremo | |
| --cov-report=xml | |
| --junitxml=test-results/${{ runner.os }}-${{ matrix.python-version }}.xml | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: RUNNER_OS,PYTHON_VERSION | |
| name: codecov-umbrella | |
| fail_ci_if_error: false |