Merge pull request #106 from rest-for-physics/jgalan_bipo

Implementing BiPo event data processing in REST
rest-for-physics · Jul 7, 2023 · 5da09a6 · 5da09a6
2 parents fe3b462 + f312b2e
commit 5da09a6
Show file tree

Hide file tree

Showing 14 changed files with 1,105 additions and 1 deletion.
diff --git a/.github/workflows/validation.yml b/.github/workflows/validation.yml
@@ -144,3 +144,27 @@ jobs:
           cd ${{ env.RAW_LIB_PATH }}/pipeline/external/dream
           restManager --c dream.rml --f dummyDreamData.fdf
           restRoot -b -q dream.C
+  BiPoData:
+    name: Process BiPo data
+    runs-on: ubuntu-latest
+    container:
+      image: ghcr.io/lobis/root-geant4-garfield:rest-for-physics
+    needs: [ build-rawlib ]
+    steps:
+      - uses: rest-for-physics/framework/.github/actions/checkout@master
+        with:
+          branch: ${{ env.BRANCH_NAME }}
+          repository: rest-for-physics/rawlib
+          path: ${{ env.RAW_LIB_PATH }}
+      - name: Restore cache
+        uses: actions/cache@v3
+        id: rawlib-install-cache
+        with:
+          key: ${{ env.BRANCH_NAME }}-${{ github.sha }}
+          path: ${{ env.REST_PATH }}
+      - name: BiPo data
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd ${{ env.RAW_LIB_PATH }}/pipeline/external/BiPo
+          restManager --c BiPoToRawSignal.rml --f BiPo3Mod2_run_2600.data
+          restRoot -b -q Validate.C
diff --git a/examples/01.BiPo/BiPoToRawSignal.rml b/examples/01.BiPo/BiPoToRawSignal.rml
@@ -0,0 +1,73 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
+
+<TRestManager>
+
+    <include file="globals.xml" />
+
+	<globals>
+		<variable name="RUN_TYPE" value="RawData" overwrite="false" />
+		<variable name="FORMAT" value="[fRunTag]_run_[fRunNumber].data" overwrite="false" />
+	</globals>
+
+	<TRestRun file="run.xml"/>
+
+	<TRestProcessRunner name="RawSignals" title="Raw processing and analysis" verboseLevel="silent">
+
+		<parameter name="eventsToProcess" value="0" />
+
+		<addProcess type="TRestRawBiPoToSignalProcess" name="BiPo" value="ON" verboseLevel="silent">
+            <parameter name="electronicsType" value="MATACQ" />
+            <parameter name="minPoints" value="0" />
+		</addProcess>
+
+		<addProcess type="TRestEventRateAnalysisProcess" name="rate" observable="all" value="ON" verboseLevel="info" >
+                <observable name="SecondsFromStart" type="double" value="ON" />
+                <observable name="HoursFromStart" type="double" value="ON" />
+                <observable name="EventTimeDelay" type="double" value="ON" />
+                <observable name="MeanRate_InHz" type="double" value="ON" />
+		</addProcess>
+
+		<addProcess type="TRestRawSignalAnalysisProcess" name="front" value="ON"
+			baseLineRange="(800,1000)" integralRange="(0,1000)"
+			pointThreshold="${POINT_TH}" pointsOverThreshold="${NPOINTS}" signalThreshold="${SGNL_TH}"
+			verboseLevel="silent" >
+                <observable name="max_amplitude_map" type="map<int,double>" value="ON" />
+                <observable name="thr_integral_map" type="map<int,double>" value="ON" />
+                <observable name="BaseLineMean" type="double" value="ON" />
+                <observable name="BaseLineSigmaMean" type="double" value="ON" />
+                <observable name="NumberOfSignals" type="int" value="ON" />
+                <observable name="NumberOfGoodSignals" type="int" value="ON" />
+                <observable name="ThresholdIntegral" type="double" value="ON" />
+                <observable name="TripleMaxIntegral" type="double" value="ON" />
+                <observable name="AmplitudeRatio" type="double" value="ON" />
+                <observable name="MaxPeakTime" type="double" value="ON" />
+                <observable name="AveragePeakTime" type="double" value="ON" />
+
+                <cut name="NumberOfGoodSignals" value="(1,1000)" />
+                <parameter name="cutsEnabled" value="true" />
+		</addProcess>
+
+		<addProcess type="TRestRawSignalAnalysisProcess" name="back" value="ON"
+			baseLineRange="(2200,2400)" integralRange="(1000,2200)"
+			pointThreshold="${POINT_TH}" pointsOverThreshold="${NPOINTS}" signalThreshold="${SGNL_TH}"
+			verboseLevel="silent" >
+                <observable name="max_amplitude_map" type="map<int,double>" value="ON" />
+                <observable name="thr_integral_map" type="map<int,double>" value="ON" />
+                <observable name="BaseLineMean" type="double" value="ON" />
+                <observable name="BaseLineSigmaMean" type="double" value="ON" />
+                <observable name="NumberOfSignals" type="int" value="ON" />
+                <observable name="NumberOfGoodSignals" type="int" value="ON" />
+                <observable name="ThresholdIntegral" type="double" value="ON" />
+                <observable name="TripleMaxIntegral" type="double" value="ON" />
+                <observable name="AmplitudeRatio" type="double" value="ON" />
+                <observable name="MaxPeakTime" type="double" value="ON" />
+                <observable name="AveragePeakTime" type="double" value="ON" />
+
+                <cut name="NumberOfGoodSignals" value="(1,1000)" />
+                <parameter name="cutsEnabled" value="true" />
+		</addProcess>
+	</TRestProcessRunner>
+
+	<addTask type="processEvents" value="ON" />
+
+</TRestManager>
diff --git a/examples/01.BiPo/panel.xml b/examples/01.BiPo/panel.xml
@@ -0,0 +1,17 @@
+
+<panel font_size="0.06">
+	<label value="Run number : [TRestRun::fRunNumber]" x="0.25" y="0.9" />
+	<label value="Run tag : [TRestRun::fRunTag]" x="0.25" y="0.82" />
+	<label value="Run starts : [[startTime]]" x="0.25" y="0.74" />
+	<label value="Run ends : [[endTime]]" x="0.25" y="0.66" />
+	<label value="Entries : [[entries]]" x="0.25" y="0.58" />
+	<label value="Run duration : [[runLength]] hours" x="0.25" y="0.50" />
+	<label value="Mean rate : [[meanRate]] Hz" x="0.25" y="0.42" />
+
+        <!--
+	<label value="Detector pressure : [TRestDetector::fPressure] bar" x="0.25" y="0.30" />
+	<label value="Mesh voltage : [TRestDetector::fAmplificationVoltage] V" x="0.25" y="0.22" />
+	<label value="Drift voltage : [TRestDetector::fDriftField] V/cm/bar" x="0.25" y="0.14" />
+	<label value="Electronics gain : [TRestDetector::fElectronicsGain]" x="0.25" y="0.06" />
+        -->
+</panel>
diff --git a/examples/01.BiPo/plots.rml b/examples/01.BiPo/plots.rml
@@ -0,0 +1,75 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<TRestManager name="SpecPlot" title="Example" verboseLevel="info">
+    <TRestAnalysisPlot name="restplot" title="Basic Plots" previewPlot="false" verboseLevel="silent">
+        <canvas size="(1800,1200)" divide="(3,3)" save="R[fRunNumber]_[fRunTag]_Raw.png"/>
+        <include file="panel.xml"/>
+        <plot name="MeanRateEvolution" title="Mean Rate evolution" xlabel="Threshold Integral [#]" ylabel="Counts" legend="ON" logscale="false" value="ON" xOffset="6" timeDisplay="ON">
+            <histo name="RateEvolution">
+                <variable name="timeStamp" nbins="1000" range=""/>
+                <variable name="rate_MeanRate_InHz" nbins="100" range="(0,300)"/>
+                <parameter name="lineColor" value="1"/>
+            </histo>
+        </plot>
+        <plot name="NoiseEvolution" title="Noise evolution" xlabel="Threshold Integral [#]" ylabel="Counts" legend="ON" logscale="false" value="ON" xOffset="6" timeDisplay="ON">
+            <histo name="Front_BaseLineSigma">
+                <variable name="timeStamp" nbins="1000" range=""/>
+                <variable name="front_BaseLineSigmaMean" range="(0,20)" nbins="100"/>
+                <parameter name="lineColor" value="1"/>
+            </histo>
+            <histo name="Back_BaseLineSigma">
+                <variable name="timeStamp" nbins="1000"/>
+                <variable name="back_BaseLineSigmaMean" nbins="100"/>
+                <parameter name="lineColor" value="1"/>
+            </histo>
+        </plot>
+        <plot name="ThresholdIntegral" title="ThresholdIntegrals" xlabel="Threshold Integral [#]" ylabel="Counts" legend="ON" logscale="false" value="ON" xOffset="6">
+            <histo name="Front_Integral">
+                <variable name="front_ThresholdIntegral" range="(0,30000)" nbins="1000"/>
+                <parameter name="lineColor" value="1"/>
+            </histo>
+            <histo name="Back_Integral">
+                <variable name="back_ThresholdIntegral" range="(0,30000)" nbins="1000"/>
+                <parameter name="lineColor" value="2"/>
+            </histo>
+        </plot>
+        <plot name="TripleMaxIntegral" title="TripleMaxIntegrals" xlabel="TripleMax Integral [#]" ylabel="Counts" legend="ON" logscale="false" value="ON" xOffset="6">
+            <histo name="Front_TripleIntegral">
+                <variable name="front_TripleMaxIntegral" range="(0,5000)" nbins="1000"/>
+                <parameter name="lineColor" value="1"/>
+            </histo>
+            <histo name="Back_TripleIntegral">
+                <variable name="back_TripleMaxIntegral" range="(0,5000)" nbins="1000"/>
+                <parameter name="lineColor" value="2"/>
+            </histo>
+        </plot>
+        <plot name="MaxPeakTime" title="MaxPeakTimes" xlabel="TripleMax Integral [#]" ylabel="Counts" legend="ON" logscale="false" value="ON" xOffset="6">
+            <histo name="Front_MaxPeakTime">
+                <variable name="front_MaxPeakTime" range="(0,2000)" nbins="200"/>
+                <parameter name="lineColor" value="1"/>
+            </histo>
+            <histo name="Back_MaxPeakTime">
+                <variable name="back_MaxPeakTime" range="(0,2000)" nbins="200"/>
+                <parameter name="lineColor" value="2"/>
+            </histo>
+        </plot>
+        <plot name="GoodSignals" title="GoodSignals" xlabel="Good signals [#]" ylabel="Counts" legend="ON" logscale="false" value="ON" xOffset="6">
+            <histo name="Front_NumberOfGoodSignals">
+                <variable name="front_NumberOfGoodSignals" range="(0,5)" nbins="5"/>
+                <parameter name="lineColor" value="1"/>
+            </histo>
+            <histo name="Back_NumberOfGoodSignals">
+                <variable name="back_NumberOfGoodSignals" range="(0,5)" nbins="5"/>
+                <parameter name="lineColor" value="2"/>
+            </histo>
+        </plot>
+        <plot name="FrontVersusBackIntegral" title="FrontVersusBackIntegral" xlabel="Front Integral [#]" ylabel="Back Integral" legend="ON" logscale="false" value="ON" xOffset="6">
+            <variable name="front_ThresholdIntegral" range="(0,30000)" nbins="100"/>
+            <variable name="back_ThresholdIntegral" range="(0,5000)" nbins="100"/>
+        </plot>
+        <plot name="FrontVersusBackMaxPeakTime" title="FrontVersusBackMaxPeakTime" xlabel="Front MaxPeakTime [#]" ylabel="Back MaxPeakTime" legend="ON" logscale="false" value="ON" xOffset="6">
+            <variable name="front_MaxPeakTime" range="(0,200)" nbins="100"/>
+            <variable name="back_MaxPeakTime" range="(1000,1800)" nbins="100"/>
+        </plot>
+    </TRestAnalysisPlot>
+    <addTask command="restplot-&gt;PlotCombinedCanvas()" value="ON"/>
+</TRestManager>
diff --git a/images/BiPo.png b/images/BiPo.png
diff --git a/inc/TRestRawBiPoToSignalProcess.h b/inc/TRestRawBiPoToSignalProcess.h
@@ -0,0 +1,127 @@
+/*************************************************************************
+ * This file is part of the REST software framework.                     *
+ *                                                                       *
+ * Copyright (C) 2016 GIFNA/TREX (University of Zaragoza)                *
+ * For more information see http://gifna.unizar.es/trex                  *
+ *                                                                       *
+ * REST is free software: you can redistribute it and/or modify          *
+ * it under the terms of the GNU General Public License as published by  *
+ * the Free Software Foundation, either version 3 of the License, or     *
+ * (at your option) any later version.                                   *
+ *                                                                       *
+ * REST is distributed in the hope that it will be useful,               *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of        *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the          *
+ * GNU General Public License for more details.                          *
+ *                                                                       *
+ * You should have a copy of the GNU General Public License along with   *
+ * REST in $REST_PATH/LICENSE.                                           *
+ * If not, see http://www.gnu.org/licenses/.                             *
+ * For the list of contributors see $REST_PATH/CREDITS.                  *
+ *************************************************************************/
+
+#ifndef RestCore_TRestBiPoToSignalProcess
+#define RestCore_TRestBiPoToSignalProcess
+
+#include "TRestRawSignalEvent.h"
+#include "TRestRawToSignalProcess.h"
+
+constexpr size_t CTAG_SZ = 4;
+
+constexpr int MATACQ_N_CH = 4;               // Number of channels
+constexpr int MATACQ_MAX_DATA_SAMP = 10240;  // Max number of samples for
+constexpr int MATACQ_BIPO_TIMEOUT = 0;       // BiPo mode timeout
+
+constexpr uint32_t MATACQ_UNDERFLOW = 0x0000;
+constexpr uint32_t MATACQ_ZERO = 0x8000;
+constexpr uint32_t MATACQ_OVERFLOW = 0xFFFF;
+
+constexpr char TAG_RUN_START[] = "STA";
+constexpr char TAG_RUN_BIPO[] = "ST2";
+constexpr char TAG_RUN_STOP[] = "STO";
+constexpr char TAG_ACQ[] = "ACQ";
+constexpr char TAG_ACQ_2[] = "AC2";
+
+//! An process to read binary data from BiPo electronics
+class TRestRawBiPoToSignalProcess : public TRestRawToSignalProcess {
+   public:
+    /// A structure to store the configuration settings of Matacq board
+    struct MatacqBoard {
+        /// The base memory address of the Matacq board
+        int32_t address;
+
+        std::array<int32_t, MATACQ_N_CH> en_ch;
+        std::array<int32_t, MATACQ_N_CH> trg_ch;
+
+        int32_t Trig_Type;
+        int32_t Threshold;
+        int32_t Nb_Acq;
+        int32_t Posttrig;
+        int32_t Time_Tag_On;
+        int32_t Sampling_GHz;
+
+        std::array<int32_t, MATACQ_N_CH> ch_shifts;
+        int32_t nChannels;
+    };
+
+    /// A structure to store the BiPo settings
+    struct BiPoSettings {
+        int32_t trigger_address;
+
+        int32_t Win1_Posttrig;
+        int32_t Timeout_200KHz;
+
+        std::array<int32_t, MATACQ_N_CH> Trig_Chan;
+        std::array<int32_t, MATACQ_N_CH> Level1_mV;
+        std::array<int32_t, MATACQ_N_CH> Level2_mV;
+
+        int32_t t1_window;
+        int32_t t2_window;
+        int32_t t1_t2_timeout;
+    };
+
+   protected:
+    /// The number of Matacq boards present on the setup
+    Int_t fNBoards = 0;  ///<
+
+    /// A vector of Matacq boards that contain the information of each card
+    std::vector<MatacqBoard> fMatacqBoard;  //<
+
+    /// A vector of BiPo settings
+    std::vector<BiPoSettings> fBiPoSettings;  //<
+
+    /// A temporary counter used to define the event id
+    Int_t fEventCounter = 0;  //!
+
+    void ReadHeader();
+    void ReadFooter();
+    void ReadBoard();
+    void ReadBiPoSetup();
+    Int_t ReadBiPoEventData(std::vector<uint16_t>& mdata);
+
+    UInt_t GetBoardIndex(Int_t address);
+    Int_t GetBin(Int_t boardIndex, Int_t channel, Int_t bin);
+
+   public:
+    void InitProcess() override;
+    void Initialize() override;
+    TRestEvent* ProcessEvent(TRestEvent* inputEvent) override;
+
+    /// Returs a given process name
+    const char* GetProcessName() const override { return "BiPoToSignal"; }
+
+    void PrintMetadata() override;
+
+    /// It gives access to a Matacq board confituration
+    MatacqBoard GetMatacqBoard(Int_t n) { return n > fNBoards ? (MatacqBoard){} : fMatacqBoard[n]; }
+
+    /// It gives access to confituration of BiPo settings
+    BiPoSettings GetBiPoSettings(Int_t n) { return n > fNBoards ? (BiPoSettings){} : fBiPoSettings[n]; }
+
+    TRestRawBiPoToSignalProcess();
+    ~TRestRawBiPoToSignalProcess();
+
+    ClassDefOverride(TRestRawBiPoToSignalProcess, 1);
+};
+
+#endif
diff --git a/inc/TRestRawToSignalProcess.h b/inc/TRestRawToSignalProcess.h
@@ -66,7 +66,7 @@ class TRestRawToSignalProcess : public TRestEventProcess {
         fSubRunOrigin = fRunInfo->GetSubRunNumber();
     }
 
-    void PrintMetadata() override;
+    virtual void PrintMetadata() override;
     void Initialize() override;
     TRestMetadata* GetProcessMetadata() const { return nullptr; }
 

diff --git a/pipeline/external/BiPo/BiPo3Mod2_run_2600.data b/pipeline/external/BiPo/BiPo3Mod2_run_2600.data