Updated contaminant database

rigdenlab · Sep 21, 2021 · 9a8711c · 9a8711c
1 parent 30e2219
commit 9a8711c
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diff --git a/simbad/command_line/simbad_database.py b/simbad/command_line/simbad_database.py
@@ -238,7 +238,7 @@ def create_contaminant_db(database, add_morda_domains, nproc=2, submit_qtype=Non
         msg = "Windows is currently not supported"
         raise RuntimeError(msg)
 
-    if StrictVersion(dimple.main.__version__) < StrictVersion('2.6.2'):
+    if StrictVersion(dimple.main.__version__) < StrictVersion('2.6.1'):
         msg = "Downloading latest Contaminant database from GitHub repo"
         logger.info(msg)
         cmd = ['svn', 'export', 'https://github.com/rigdenlab/SIMBAD/trunk/static/contaminants']

diff --git a/static/contaminants/BACTH/THER_BACTH/P41212/6n4w.dat b/static/contaminants/BACTH/THER_BACTH/P41212/6n4w.dat
diff --git a/static/contaminants/BOVIN/CTRA_BOVIN/P41212/7kty.dat b/static/contaminants/BOVIN/CTRA_BOVIN/P41212/7kty.dat
diff --git a/static/contaminants/BOVIN/TRY1_BOVIN/C121/7jwx.dat b/static/contaminants/BOVIN/TRY1_BOVIN/C121/7jwx.dat
diff --git a/static/contaminants/BOVIN/TRY1_BOVIN/P212121/1v2o.dat b/static/contaminants/BOVIN/TRY1_BOVIN/P212121/1v2o.dat
diff --git a/static/contaminants/BOVIN/TRY1_BOVIN/P212121/6svj.dat b/static/contaminants/BOVIN/TRY1_BOVIN/P212121/6svj.dat
diff --git a/static/contaminants/BOVIN/TRY1_BOVIN/P212121/7bs6.dat b/static/contaminants/BOVIN/TRY1_BOVIN/P212121/7bs6.dat
diff --git a/static/contaminants/BOVIN/TRY1_BOVIN/P3121/6zq2.dat b/static/contaminants/BOVIN/TRY1_BOVIN/P3121/6zq2.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P1/6a10.dat b/static/contaminants/CHICK/LYSC_CHICK/P1/6a10.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P1/6d6g.dat b/static/contaminants/CHICK/LYSC_CHICK/P1/6d6g.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P1/7avf.dat b/static/contaminants/CHICK/LYSC_CHICK/P1/7avf.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P1211/6ht2.dat b/static/contaminants/CHICK/LYSC_CHICK/P1211/6ht2.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P212121/6f1m.dat b/static/contaminants/CHICK/LYSC_CHICK/P212121/6f1m.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P212121/6ro5.dat b/static/contaminants/CHICK/LYSC_CHICK/P212121/6ro5.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P212121/6s7n.dat b/static/contaminants/CHICK/LYSC_CHICK/P212121/6s7n.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P212121/6syc.dat b/static/contaminants/CHICK/LYSC_CHICK/P212121/6syc.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P43212/3txb.dat b/static/contaminants/CHICK/LYSC_CHICK/P43212/3txb.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P43212/4a7d.dat b/static/contaminants/CHICK/LYSC_CHICK/P43212/4a7d.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P43212/4hpi.dat b/static/contaminants/CHICK/LYSC_CHICK/P43212/4hpi.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P43212/4ngo.dat b/static/contaminants/CHICK/LYSC_CHICK/P43212/4ngo.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P43212/5kki.dat b/static/contaminants/CHICK/LYSC_CHICK/P43212/5kki.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P43212/6wrm.dat b/static/contaminants/CHICK/LYSC_CHICK/P43212/6wrm.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P43212/6zs8.dat b/static/contaminants/CHICK/LYSC_CHICK/P43212/6zs8.dat
diff --git a/static/contaminants/CHICK/LYSC_CHICK/P43212/7e02.dat b/static/contaminants/CHICK/LYSC_CHICK/P43212/7e02.dat
diff --git a/static/contaminants/ECOBD/A0A140N6S1_ECOBD/I422/2r6s.dat b/static/contaminants/ECOBD/A0A140N6S1_ECOBD/I422/2r6s.dat
diff --git a/static/contaminants/ECOLI/BFR_ECOLI/P42212/6p8l.dat b/static/contaminants/ECOLI/BFR_ECOLI/P42212/6p8l.dat
diff --git a/static/contaminants/ECOLI/CATE_ECOLI/P1211/6ztw.dat b/static/contaminants/ECOLI/CATE_ECOLI/P1211/6ztw.dat
diff --git a/static/contaminants/ECOLI/DPS_ECOLI/C2221/1f33.dat b/static/contaminants/ECOLI/DPS_ECOLI/C2221/1f33.dat
diff --git a/static/contaminants/ECOLI/DPS_ECOLI/C2221/6b0d.dat b/static/contaminants/ECOLI/DPS_ECOLI/C2221/6b0d.dat
diff --git a/static/contaminants/ECOLI/DPS_ECOLI/P1/1jts.dat b/static/contaminants/ECOLI/DPS_ECOLI/P1/1jts.dat
diff --git a/static/contaminants/ECOLI/DPS_ECOLI/P1/6qvx.dat b/static/contaminants/ECOLI/DPS_ECOLI/P1/6qvx.dat
diff --git a/static/contaminants/ECOLI/DPS_ECOLI/P1/7aqs.dat b/static/contaminants/ECOLI/DPS_ECOLI/P1/7aqs.dat
diff --git a/static/contaminants/ECOLI/DPS_ECOLI/P21212/1dps.dat b/static/contaminants/ECOLI/DPS_ECOLI/P21212/1dps.dat
diff --git a/static/contaminants/ECOLI/DPS_ECOLI/P32/1jre.dat b/static/contaminants/ECOLI/DPS_ECOLI/P32/1jre.dat
diff --git a/static/contaminants/ECOLI/DPS_ECOLI/P32/1l8h.dat b/static/contaminants/ECOLI/DPS_ECOLI/P32/1l8h.dat
diff --git a/static/contaminants/ECOLI/G3P1_ECOLI/C2221/6utm.dat b/static/contaminants/ECOLI/G3P1_ECOLI/C2221/6utm.dat
diff --git a/static/contaminants/ECOLI/G3P1_ECOLI/P1/6io4.dat b/static/contaminants/ECOLI/G3P1_ECOLI/P1/6io4.dat
diff --git a/static/contaminants/ECOLI/KDSA_ECOLI/I23/6u57.dat b/static/contaminants/ECOLI/KDSA_ECOLI/I23/6u57.dat
diff --git a/static/contaminants/ECOLI/MALE_ECOLI/C121/5gxt.dat b/static/contaminants/ECOLI/MALE_ECOLI/C121/5gxt.dat
diff --git a/static/contaminants/ECOLI/MALE_ECOLI/H32/4wrn.dat b/static/contaminants/ECOLI/MALE_ECOLI/H32/4wrn.dat
diff --git a/static/contaminants/ECOLI/MALE_ECOLI/P21212/4xhs.dat b/static/contaminants/ECOLI/MALE_ECOLI/P21212/4xhs.dat
diff --git a/static/contaminants/ECOLI/MALE_ECOLI/P212121/5t0a.dat b/static/contaminants/ECOLI/MALE_ECOLI/P212121/5t0a.dat
diff --git a/static/contaminants/ECOLI/MALE_ECOLI/P212121/6kxg.dat b/static/contaminants/ECOLI/MALE_ECOLI/P212121/6kxg.dat
diff --git a/static/contaminants/ECOLI/NAGB_ECOLI/H32/1hot.dat b/static/contaminants/ECOLI/NAGB_ECOLI/H32/1hot.dat
diff --git a/static/contaminants/ECOLI/NAGB_ECOLI/P6322/1jt9.dat b/static/contaminants/ECOLI/NAGB_ECOLI/P6322/1jt9.dat
diff --git a/static/contaminants/ECOLI/ODO2_ECOLI/I4/6pbr.dat b/static/contaminants/ECOLI/ODO2_ECOLI/I4/6pbr.dat
diff --git a/static/contaminants/ECOLI/OMPF_ECOLI/P212121/6zhv.dat b/static/contaminants/ECOLI/OMPF_ECOLI/P212121/6zhv.dat
diff --git a/static/contaminants/ECOLI/OMPF_ECOLI/P321/6zhp.dat b/static/contaminants/ECOLI/OMPF_ECOLI/P321/6zhp.dat
diff --git a/static/contaminants/ECOLI/TKT1_ECOLI/P212121/6rjc.dat b/static/contaminants/ECOLI/TKT1_ECOLI/P212121/6rjc.dat
diff --git a/static/contaminants/ECOLI/TPIS_ECOLI/P212121/1tre.dat b/static/contaminants/ECOLI/TPIS_ECOLI/P212121/1tre.dat
diff --git a/static/contaminants/HRV2/POLG_HRV2/P3221/7ara.dat b/static/contaminants/HRV2/POLG_HRV2/P3221/7ara.dat
diff --git a/static/contaminants/HUMAN/ELNE_HUMAN/C121/6sma.dat b/static/contaminants/HUMAN/ELNE_HUMAN/C121/6sma.dat
diff --git a/static/contaminants/HUMAN/ELNE_HUMAN/H32/6f5m.dat b/static/contaminants/HUMAN/ELNE_HUMAN/H32/6f5m.dat
diff --git a/static/contaminants/HUMAN/ELNE_HUMAN/P212121/6e69.dat b/static/contaminants/HUMAN/ELNE_HUMAN/P212121/6e69.dat
diff --git a/static/contaminants/HUMAN/THRB_HUMAN/C2221/6bjr.dat b/static/contaminants/HUMAN/THRB_HUMAN/C2221/6bjr.dat
diff --git a/static/contaminants/PARAQ/PRTK_PARAQ/P1211/6kkf.dat b/static/contaminants/PARAQ/PRTK_PARAQ/P1211/6kkf.dat
diff --git a/static/contaminants/PARAQ/PRTK_PARAQ/P43212/5rp4.dat b/static/contaminants/PARAQ/PRTK_PARAQ/P43212/5rp4.dat
diff --git a/static/contaminants/PARAQ/PRTK_PARAQ/P43212/5whw.dat b/static/contaminants/PARAQ/PRTK_PARAQ/P43212/5whw.dat
diff --git a/static/contaminants/PIG/PEPA_PIG/P6522/6xd2.dat b/static/contaminants/PIG/PEPA_PIG/P6522/6xd2.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P1/6zvy.dat b/static/contaminants/RHORH/DHAA_RHORH/P1/6zvy.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P1211/6sp5.dat b/static/contaminants/RHORH/DHAA_RHORH/P1211/6sp5.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P1211/6xt8.dat b/static/contaminants/RHORH/DHAA_RHORH/P1211/6xt8.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P1211/6zvv.dat b/static/contaminants/RHORH/DHAA_RHORH/P1211/6zvv.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P1211/6zvx.dat b/static/contaminants/RHORH/DHAA_RHORH/P1211/6zvx.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P1211/7ond.dat b/static/contaminants/RHORH/DHAA_RHORH/P1211/7ond.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P21212/6zvu.dat b/static/contaminants/RHORH/DHAA_RHORH/P21212/6zvu.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P212121/6sp8.dat b/static/contaminants/RHORH/DHAA_RHORH/P212121/6sp8.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P212121/6ty7.dat b/static/contaminants/RHORH/DHAA_RHORH/P212121/6ty7.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P212121/6xtc.dat b/static/contaminants/RHORH/DHAA_RHORH/P212121/6xtc.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P212121/6zcc.dat b/static/contaminants/RHORH/DHAA_RHORH/P212121/6zcc.dat
diff --git a/static/contaminants/RHORH/DHAA_RHORH/P321/6y7b.dat b/static/contaminants/RHORH/DHAA_RHORH/P321/6y7b.dat
diff --git a/static/contaminants/SCHJA/GST26_SCHJA/P21212/6n8u.dat b/static/contaminants/SCHJA/GST26_SCHJA/P21212/6n8u.dat
diff --git a/static/contaminants/SCHJA/GST26_SCHJA/P212121/6rwd.dat b/static/contaminants/SCHJA/GST26_SCHJA/P212121/6rwd.dat
diff --git a/static/contaminants/SERPL/S0AKJ8_SERPL/I422/4mca.dat b/static/contaminants/SERPL/S0AKJ8_SERPL/I422/4mca.dat