Update README.md #681
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - "master" | |
| pull_request: | |
| branches: | |
| - "master" | |
| concurrency: | |
| group: "${{ github.workflow }}-${{ github.ref }}" | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| tests: | |
| runs-on: ${{ matrix.OS }}-latest | |
| name: "tests" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu', 'macos'] | |
| python-version: | |
| - 3.9 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Mambaforge | |
| - name: "Install" | |
| run: pip install -e . | |
| - name: "Test imports" | |
| run: | | |
| # if we add more to this, consider changing to for + env vars | |
| python -Ic "import ensembler" | |
| - name: "Environment Information" | |
| run: | | |
| mamba info -a | |
| mamba list | |
| - name: "Run tests" | |
| run: | | |
| pytest -v --cov=ensembler --cov-report=xml | |
| - name: codecovg | |
| if: ${{ github.repository == 'rinikerlab/ensembler' && github.event != 'schedule'}} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: True | |
| verbose: True |