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@roblanf roblanf released this 04 Jun 09:56
· 228 commits to master since this release
3-6-20
451da70

The trees in this release were generated with the following command line:

bash global_tree_gisaid.sh -i gisaid_hcov-19_2020_06_02_07.fasta -o global.fa -t 35 -k 100

The raw sequence file contains all available SARS-CoV-2 genomes in GISAID available on the 3rd of June 2020, Australia time.

The ZIP file contains the code necessary to reproduce the trees themselves, and the README in the zip file also describes the methods used in detail. I also include the trees themselves here so that they can be easily downloaded without downloaded the entire repo.

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