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Padamsey*, Katsanevaki, Dupuy, and Rochefort*

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Rochefort lab data repository

https://datashare.ed.ac.uk/handle/10283/3871

Computational model

More details about the code for the computational model can be found in the folder computational-model.

List of figures

Figure 1

D) InVivoPatchClampAnalysis/VoltageClampAnalysis_Movie.m, and functions called within
G) InVivoPatchClampAnalysis/CurrentClampAnalysis_Movie.m and functions called within

Figure 2

A-C) ExVivoPatchClampAnalysis/EPSCanalysis.m, and functions called within
D-F) ExVivoPatchClampAnalysis/MiniAnalysis.m and functions called within

Figure 3

C-G) InVivoPatchClampAnalysis/CurrentClampAnalysis_Movie.m, and functions called within
H-K) Computational model - Toy model (python jupyter notebook); computational-model/neuron-model/simu_toy_model_passive.ipynb

Figure 4

B-K) InVivoPatchClampAnalysis/CurrentClampAnalysis_Grating.m, and functions called within
L) GaussianModel/OrientationTuningGaussianModel.m

Tuning curves were normalized to the peak value of the tuning curve per neuron.

Figure 5

Computational model - Deterministic model (python jupyter notebook), computational-model

B) computational-model/neuron-model/simu_trace_detchannels.ipynb
C-F) computational-model/neuron-model/simu_deterministic_model.ipynb

Computational model - Stochastic model (python jupyter notebook), computational-model

H) computational-model/neuron-model/simu_trace_stochannels.ipynb
I-L) computational-model/neuron-model/simu_stochastic_model.ipynb

Tuning curves were normalized to the peak value of the tuning curve per neuron.

Figure 6

B,C) CalciumImagingAnalysis/CalciumImagingAnalysisforGratings.m, and functions called within
D) CalciumImagingAnalysis/CalciumImagingAnalysisforNaturalMovie.m, calls MLEDecorderNatStimLOO.m 

Tuning curves were normalized to the peak value of the tuning curve per neuron.

Figure 7

C) CalciumImagingAnalysis/CalciumImagingAnalysisforGratings.m, and functions called within
D) CalciumImagingAnalysis/CalciumImagingAnalysisforNaturalMovie.m, calls MLEDecorderNatStimLOO.m 

Tuning curves were normalized to the peak value of the tuning curve per neuron.

Figure S1

B) InVivoPatchClampAnalysis/VoltageClampAnalysis_Movie.m, and functions called within

Figure S4

B-F) InVivoPatchClampAnalysis/VoltageClampAnalysis_Grating.m, and functions called within

Tuning curves were normalized to the peak value of the tuning curve per neuron.

Figure S5

E,F) CalciumImagingAnalysis/MLEDecorderOrientationLOO.m, and functions called within

Figure S6

C-H) CalciumImagingAnalysis/CalciumImagingAnalysisforGratings.m, and functions called within

Tuning curves were normalized to the peak value of the tuning curve per neuron.