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update readme
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ShixiangWang committed Oct 30, 2024
1 parent 5c65b32 commit aa33f6f
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5 changes: 3 additions & 2 deletions README.Rmd
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Expand Up @@ -44,10 +44,11 @@ Public omics data from UCSC Xena are supported through [**multiple turn-key Xena

## Installation

Install stable release from CRAN with:
Install stable release from r-universe/CRAN with:

```{r, eval=FALSE}
install.packages("UCSCXenaTools")
install.packages('UCSCXenaTools', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))
#install.packages("UCSCXenaTools")
```

You can also install devel version of **UCSCXenaTools** from github with:
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7 changes: 4 additions & 3 deletions README.md
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Expand Up @@ -40,10 +40,11 @@ this package?**

## Installation

Install stable release from CRAN with:
Install stable release from r-universe/CRAN with:

``` r
install.packages("UCSCXenaTools")
install.packages('UCSCXenaTools', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))
#install.packages("UCSCXenaTools")
```

You can also install devel version of **UCSCXenaTools** from github
Expand Down Expand Up @@ -172,7 +173,7 @@ Query and download.
XenaQuery(df_todo) %>%
XenaDownload() -> xe_download
#> This will check url status, please be patient.
#> All downloaded files will under directory /tmp/RtmpyHpIIe.
#> All downloaded files will under directory /tmp/RtmpYsoGw3.
#> The 'trans_slash' option is FALSE, keep same directory structure as Xena.
#> Creating directories for datasets...
#> Downloading TCGA.LUNG.sampleMap/LUNG_clinicalMatrix
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