Automated deployment to update software database 2023-08-20 (#346)

Co-authored-by: github-actions <[email protected]>

database/github/Autostronomy/AstroPhot/metadata.json

@@ -0,0 +1,46 @@
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+    "uid": "github/Autostronomy/AstroPhot",
+    "url": "https://github.com/Autostronomy/AstroPhot",
+    "data": {
+        "doi": [],
+        "title": "AstroPhot: Fitting Everything Everywhere All at Once in Astronomical Images",
+        "url": "https://github.com/Autostronomy/AstroPhot",
+        "name": "AstroPhot",
+        "full_name": "Autostronomy/AstroPhot",
+        "html_url": "https://github.com/Autostronomy/AstroPhot",
+        "description": "A fast, flexible, automated, and differentiable astronomical image modelling tool for precise parallel multi-wavelength photometry",
+        "created_at": "2022-03-23T13:51:16Z",
+        "updated_at": "2023-08-16T20:28:36Z",
+        "clone_url": "https://github.com/Autostronomy/AstroPhot.git",
+        "homepage": "https://autostronomy.github.io/AstroPhot/",
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+        "watchers_count": 39,
+        "language": "Python",
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+        "license": {
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+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
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+        "owner": {
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+            "login": "Autostronomy",
+            "type": "Organization"
+        },
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+            "pytorch",
+            "scientific-computing",
+            "science-research"
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+        "timestamp": "2023-08-20 00:31:12.910733",
+        "avatar": "https://avatars.githubusercontent.com/u/136352278?v=4"
+    }
+}

database/github/BobAubouin/Python_Anesthesia_Simulator/metadata.json

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+    "uid": "github/BobAubouin/Python_Anesthesia_Simulator",
+    "url": "https://github.com/BobAubouin/Python_Anesthesia_Simulator",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.8171326",
+        "name": "Python_Anesthesia_Simulator",
+        "url": "https://github.com/BobAubouin/Python_Anesthesia_Simulator",
+        "full_name": "BobAubouin/Python_Anesthesia_Simulator",
+        "html_url": "https://github.com/BobAubouin/Python_Anesthesia_Simulator",
+        "description": "Simulate the effect of drugs during total intrevenous anesthesia",
+        "created_at": "2022-10-10T07:00:16Z",
+        "updated_at": "2023-07-21T09:16:26Z",
+        "clone_url": "https://github.com/BobAubouin/Python_Anesthesia_Simulator.git",
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+        "license": {
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+            "login": "BobAubouin",
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+        "topics": [
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+            "simulation",
+            "drug-dosage"
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+        "timestamp": "2023-08-20 00:31:28.305300",
+        "avatar": "https://avatars.githubusercontent.com/u/32908518?v=4"
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+}

database/github/arshajii/ema/metadata.json

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+    "uid": "github/arshajii/ema",
+    "url": "https://github.com/arshajii/ema",
+    "data": {
+        "title": "EMA",
+        "url": "https://github.com/arshajii/ema",
+        "credit": [],
+        "tags": [
+            "high-throughput-sequencing"
+        ],
+        "description": "Fast & accurate alignment of barcoded short-reads",
+        "name": "ema",
+        "full_name": "arshajii/ema",
+        "html_url": "https://github.com/arshajii/ema",
+        "created_at": "2017-03-11T18:08:45Z",
+        "updated_at": "2023-03-28T07:00:08Z",
+        "clone_url": "https://github.com/arshajii/ema.git",
+        "homepage": "http://ema.csail.mit.edu",
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+        "watchers_count": 30,
+        "language": "C++",
+        "open_issues_count": 17,
+        "license": {
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+            "name": "MIT License",
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+            "url": "https://api.github.com/licenses/mit",
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+            "login": "arshajii",
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+        },
+        "topics": [
+            "bioinformatics",
+            "sequence-alignment"
+        ],
+        "timestamp": "2023-08-20 00:33:25.464037",
+        "avatar": "https://avatars.githubusercontent.com/u/2407176?v=4"
+    }
+}

database/github/arumugamlab/msamtools/metadata.json

@@ -0,0 +1,41 @@
+{
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+    "uid": "github/arumugamlab/msamtools",
+    "url": "https://github.com/arumugamlab/msamtools",
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+        "title": "msamtools",
+        "url": "https://github.com/arumugamlab/msamtools",
+        "credit": [],
+        "tags": [
+            "metagenomic-sequencing-analysis",
+            "high-throughput-sequencing"
+        ],
+        "description": "Metagenomics-related extended functionalities to samtools",
+        "name": "msamtools",
+        "full_name": "arumugamlab/msamtools",
+        "html_url": "https://github.com/arumugamlab/msamtools",
+        "created_at": "2019-11-21T13:07:47Z",
+        "updated_at": "2023-05-02T06:29:10Z",
+        "clone_url": "https://github.com/arumugamlab/msamtools.git",
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+        "stargazers_count": 8,
+        "watchers_count": 8,
+        "language": "C",
+        "license": {
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+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
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+        "owner": {
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+            "login": "arumugamlab",
+            "type": "User"
+        },
+        "timestamp": "2023-08-20 00:34:21.935165",
+        "avatar": "https://avatars.githubusercontent.com/u/56064268?v=4"
+    }
+}

database/github/cdanielmachado/carveme/metadata.json

@@ -0,0 +1,44 @@
+{
+    "parser": "github",
+    "uid": "github/cdanielmachado/carveme",
+    "url": "https://github.com/cdanielmachado/carveme",
+    "data": {
+        "doi": "10.1038/s41559-022-01939-0",
+        "name": "carveme",
+        "url": "https://github.com/cdanielmachado/carveme",
+        "full_name": "cdanielmachado/carveme",
+        "html_url": "https://github.com/cdanielmachado/carveme",
+        "description": "CarveMe: genome-scale metabolic model reconstruction",
+        "created_at": "2017-07-26T13:43:30Z",
+        "updated_at": "2023-08-08T00:37:22Z",
+        "clone_url": "https://github.com/cdanielmachado/carveme.git",
+        "size": 118708,
+        "stargazers_count": 110,
+        "watchers_count": 110,
+        "language": "Python",
+        "open_issues_count": 30,
+        "license": {
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+            "name": "Other",
+            "spdx_id": "NOASSERTION",
+            "url": null,
+            "node_id": "MDc6TGljZW5zZTA="
+        },
+        "subscribers_count": 7,
+        "owner": {
+            "html_url": "https://github.com/cdanielmachado",
+            "avatar_url": "https://avatars.githubusercontent.com/u/2588245?v=4",
+            "login": "cdanielmachado",
+            "type": "User"
+        },
+        "topics": [
+            "metabolism",
+            "modeling",
+            "python",
+            "reconstruction",
+            "genome-scale"
+        ],
+        "timestamp": "2023-08-20 00:32:37.194782",
+        "avatar": "https://avatars.githubusercontent.com/u/2588245?v=4"
+    }
+}

database/github/frank1010111/bluebonnet/metadata.json

@@ -0,0 +1,37 @@
+{
+    "parser": "github",
+    "uid": "github/frank1010111/bluebonnet",
+    "url": "https://github.com/frank1010111/bluebonnet",
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+        "name": "bluebonnet",
+        "url": "https://github.com/frank1010111/bluebonnet",
+        "full_name": "frank1010111/bluebonnet",
+        "html_url": "https://github.com/frank1010111/bluebonnet",
+        "description": "Scaling solutions for production analysis from unconventional oil and gas wells",
+        "created_at": "2021-09-13T22:27:23Z",
+        "updated_at": "2023-08-17T10:08:00Z",
+        "clone_url": "https://github.com/frank1010111/bluebonnet.git",
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+        "license": {
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+            "name": "BSD 3-Clause \"New\" or \"Revised\" License",
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+        "timestamp": "2023-08-20 00:31:27.890471",
+        "avatar": "https://avatars.githubusercontent.com/u/4694479?v=4"
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+}

database/github/johentsch/ms3/metadata.json

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+{
+    "parser": "github",
+    "uid": "github/johentsch/ms3",
+    "url": "https://github.com/johentsch/ms3",
+    "data": {
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+        "name": "ms3",
+        "url": "https://github.com/johentsch/ms3",
+        "full_name": "johentsch/ms3",
+        "html_url": "https://github.com/johentsch/ms3",
+        "description": "A parser for annotated MuseScore 3 files.",
+        "created_at": "2020-05-04T14:14:34Z",
+        "updated_at": "2023-08-09T05:00:09Z",
+        "clone_url": "https://github.com/johentsch/ms3.git",
+        "homepage": "https://johentsch.github.io/ms3/",
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+            "login": "johentsch",
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+        },
+        "topics": [
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+            "corpus-data",
+            "corpus-generator",
+            "corpus-processing",
+            "corpus-tools",
+            "musescore",
+            "musescore2",
+            "musescore3",
+            "musescore4",
+            "music-score",
+            "music-scores",
+            "parser",
+            "sheet-music",
+            "sheet-music-parser",
+            "tsv",
+            "tsv-files",
+            "tsv-format",
+            "xml-parser",
+            "xml-parser-library",
+            "xml-parsing"
+        ],
+        "timestamp": "2023-08-20 00:31:27.037417",
+        "avatar": "https://avatars.githubusercontent.com/u/42718519?v=4"
+    }
+}

database/github/julianreul/mode_behave/metadata.json

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+    "parser": "github",
+    "uid": "github/julianreul/mode_behave",
+    "url": "https://github.com/julianreul/mode_behave",
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+        "full_name": "julianreul/mode_behave",
+        "html_url": "https://github.com/julianreul/mode_behave",
+        "description": "A Python package for estimating mixed logit models with nonparametric distributions",
+        "created_at": "2022-08-09T04:56:00Z",
+        "updated_at": "2022-10-04T08:05:42Z",
+        "clone_url": "https://github.com/julianreul/mode_behave.git",
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+        "language": "Python",
+        "license": {
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+            "name": "Other",
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+            "node_id": "MDc6TGljZW5zZTA="
+        },
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+        "owner": {
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+            "login": "julianreul",
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+        "timestamp": "2023-08-20 00:31:27.460109",
+        "avatar": "https://avatars.githubusercontent.com/u/42872728?v=4"
+    }
+}

database/github/kuanrongchan/COVID19-severity/metadata.json

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+{
+    "parser": "github",
+    "uid": "github/kuanrongchan/COVID19-severity",
+    "url": "https://github.com/kuanrongchan/COVID19-severity",
+    "data": {
+        "doi": "10.1016/J.EBIOM.2023.104472",
+        "name": "COVID19-severity",
+        "url": "https://github.com/kuanrongchan/COVID19-severity",
+        "full_name": "kuanrongchan/COVID19-severity",
+        "html_url": "https://github.com/kuanrongchan/COVID19-severity",
+        "created_at": "2022-01-02T00:21:22Z",
+        "updated_at": "2023-05-05T03:21:46Z",
+        "clone_url": "https://github.com/kuanrongchan/COVID19-severity.git",
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+        "language": "Python",
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+        "owner": {
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+            "avatar_url": "https://avatars.githubusercontent.com/u/91276553?v=4",
+            "login": "kuanrongchan",
+            "type": "User"
+        },
+        "timestamp": "2023-08-20 00:32:35.863927",
+        "avatar": "https://avatars.githubusercontent.com/u/91276553?v=4"
+    }
+}