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Merge pull request #3 from rslab-ntua/development
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@alekfal
alekfal authored Jan 31, 2024
2 parents 7744dcc + de76249 commit 4d30518
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49 changes: 49 additions & 0 deletions .github/workflows/python-package.yml
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name: Python package

on:
push:
branches: [ "main", "development" ]
pull_request:
branches: [ "main", "development" ]

jobs:
build:

runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10", "3.11", "3.12"]

steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
pip install -e.[dev]
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
working-directory: tests/
run: |
if [ ${{ github.event_name }} == 'push' ]; then
# Run with sudo to delete create files
pytest --cov --cov-report=term --cov-report=xml
else
pytest
fi
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v3
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
7 changes: 7 additions & 0 deletions .vscode/settings.json
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{
"python.testing.pytestArgs": [
"tests"
],
"python.testing.unittestEnabled": false,
"python.testing.pytestEnabled": true
}
153 changes: 83 additions & 70 deletions LICENSE
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@@ -1,21 +1,23 @@
GNU AFFERO GENERAL PUBLIC LICENSE
Version 3, 19 November 2007
GNU GENERAL PUBLIC LICENSE
Version 3, 29 June 2007

Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.

Preamble

The GNU Affero General Public License is a free, copyleft license for
software and other kinds of works, specifically designed to ensure
cooperation with the community in the case of network server software.
The GNU General Public License is a free, copyleft license for
software and other kinds of works.

The licenses for most software and other practical works are designed
to take away your freedom to share and change the works. By contrast,
our General Public Licenses are intended to guarantee your freedom to
the GNU General Public License is intended to guarantee your freedom to
share and change all versions of a program--to make sure it remains free
software for all its users.
software for all its users. We, the Free Software Foundation, use the
GNU General Public License for most of our software; it applies also to
any other work released this way by its authors. You can apply it to
your programs, too.

When we speak of free software, we are referring to freedom, not
price. Our General Public Licenses are designed to make sure that you
Expand All @@ -24,34 +26,44 @@ them if you wish), that you receive source code or can get it if you
want it, that you can change the software or use pieces of it in new
free programs, and that you know you can do these things.

Developers that use our General Public Licenses protect your rights
with two steps: (1) assert copyright on the software, and (2) offer
you this License which gives you legal permission to copy, distribute
and/or modify the software.

A secondary benefit of defending all users' freedom is that
improvements made in alternate versions of the program, if they
receive widespread use, become available for other developers to
incorporate. Many developers of free software are heartened and
encouraged by the resulting cooperation. However, in the case of
software used on network servers, this result may fail to come about.
The GNU General Public License permits making a modified version and
letting the public access it on a server without ever releasing its
source code to the public.

The GNU Affero General Public License is designed specifically to
ensure that, in such cases, the modified source code becomes available
to the community. It requires the operator of a network server to
provide the source code of the modified version running there to the
users of that server. Therefore, public use of a modified version, on
a publicly accessible server, gives the public access to the source
code of the modified version.

An older license, called the Affero General Public License and
published by Affero, was designed to accomplish similar goals. This is
a different license, not a version of the Affero GPL, but Affero has
released a new version of the Affero GPL which permits relicensing under
this license.
To protect your rights, we need to prevent others from denying you
these rights or asking you to surrender the rights. Therefore, you have
certain responsibilities if you distribute copies of the software, or if
you modify it: responsibilities to respect the freedom of others.

For example, if you distribute copies of such a program, whether
gratis or for a fee, you must pass on to the recipients the same
freedoms that you received. You must make sure that they, too, receive
or can get the source code. And you must show them these terms so they
know their rights.

Developers that use the GNU GPL protect your rights with two steps:
(1) assert copyright on the software, and (2) offer you this License
giving you legal permission to copy, distribute and/or modify it.

For the developers' and authors' protection, the GPL clearly explains
that there is no warranty for this free software. For both users' and
authors' sake, the GPL requires that modified versions be marked as
changed, so that their problems will not be attributed erroneously to
authors of previous versions.

Some devices are designed to deny users access to install or run
modified versions of the software inside them, although the manufacturer
can do so. This is fundamentally incompatible with the aim of
protecting users' freedom to change the software. The systematic
pattern of such abuse occurs in the area of products for individuals to
use, which is precisely where it is most unacceptable. Therefore, we
have designed this version of the GPL to prohibit the practice for those
products. If such problems arise substantially in other domains, we
stand ready to extend this provision to those domains in future versions
of the GPL, as needed to protect the freedom of users.

Finally, every program is threatened constantly by software patents.
States should not allow patents to restrict development and use of
software on general-purpose computers, but in those that do, we wish to
avoid the special danger that patents applied to a free program could
make it effectively proprietary. To prevent this, the GPL assures that
patents cannot be used to render the program non-free.

The precise terms and conditions for copying, distribution and
modification follow.
Expand All @@ -60,7 +72,7 @@ modification follow.

0. Definitions.

"This License" refers to version 3 of the GNU Affero General Public License.
"This License" refers to version 3 of the GNU General Public License.

"Copyright" also means copyright-like laws that apply to other kinds of
works, such as semiconductor masks.
Expand Down Expand Up @@ -537,45 +549,35 @@ to collect a royalty for further conveying from those to whom you convey
the Program, the only way you could satisfy both those terms and this
License would be to refrain entirely from conveying the Program.

13. Remote Network Interaction; Use with the GNU General Public License.

Notwithstanding any other provision of this License, if you modify the
Program, your modified version must prominently offer all users
interacting with it remotely through a computer network (if your version
supports such interaction) an opportunity to receive the Corresponding
Source of your version by providing access to the Corresponding Source
from a network server at no charge, through some standard or customary
means of facilitating copying of software. This Corresponding Source
shall include the Corresponding Source for any work covered by version 3
of the GNU General Public License that is incorporated pursuant to the
following paragraph.
13. Use with the GNU Affero General Public License.

Notwithstanding any other provision of this License, you have
permission to link or combine any covered work with a work licensed
under version 3 of the GNU General Public License into a single
under version 3 of the GNU Affero General Public License into a single
combined work, and to convey the resulting work. The terms of this
License will continue to apply to the part which is the covered work,
but the work with which it is combined will remain governed by version
3 of the GNU General Public License.
but the special requirements of the GNU Affero General Public License,
section 13, concerning interaction through a network will apply to the
combination as such.

14. Revised Versions of this License.

The Free Software Foundation may publish revised and/or new versions of
the GNU Affero General Public License from time to time. Such new versions
will be similar in spirit to the present version, but may differ in detail to
the GNU General Public License from time to time. Such new versions will
be similar in spirit to the present version, but may differ in detail to
address new problems or concerns.

Each version is given a distinguishing version number. If the
Program specifies that a certain numbered version of the GNU Affero General
Program specifies that a certain numbered version of the GNU General
Public License "or any later version" applies to it, you have the
option of following the terms and conditions either of that numbered
version or of any later version published by the Free Software
Foundation. If the Program does not specify a version number of the
GNU Affero General Public License, you may choose any version ever published
GNU General Public License, you may choose any version ever published
by the Free Software Foundation.

If the Program specifies that a proxy can decide which future
versions of the GNU Affero General Public License can be used, that proxy's
versions of the GNU General Public License can be used, that proxy's
public statement of acceptance of a version permanently authorizes you
to choose that version for the Program.

Expand Down Expand Up @@ -629,33 +631,44 @@ to attach them to the start of each source file to most effectively
state the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.

cropmaps
Copyright (C) 2022 prima-mago
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) <year> <name of author>

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published
by the Free Software Foundation, either version 3 of the License, or
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
GNU General Public License for more details.

You should have received a copy of the GNU Affero General Public License
You should have received a copy of the GNU General Public License
along with this program. If not, see <https://www.gnu.org/licenses/>.

Also add information on how to contact you by electronic and paper mail.

If your software can interact with users remotely through a computer
network, you should also make sure that it provides a way for users to
get its source. For example, if your program is a web application, its
interface could display a "Source" link that leads users to an archive
of the code. There are many ways you could offer source, and different
solutions will be better for different programs; see section 13 for the
specific requirements.
If the program does terminal interaction, make it output a short
notice like this when it starts in an interactive mode:

<program> Copyright (C) <year> <name of author>
This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.

The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, your program's commands
might be different; for a GUI interface, you would use an "about box".

You should also get your employer (if you work as a programmer) or school,
if any, to sign a "copyright disclaimer" for the program, if necessary.
For more information on this, and how to apply and follow the GNU AGPL, see
For more information on this, and how to apply and follow the GNU GPL, see
<https://www.gnu.org/licenses/>.

The GNU General Public License does not permit incorporating your program
into proprietary programs. If your program is a subroutine library, you
may consider it more useful to permit linking proprietary applications with
the library. If this is what you want to do, use the GNU Lesser General
Public License instead of this License. But first, please read
<https://www.gnu.org/licenses/why-not-lgpl.html>.
23 changes: 12 additions & 11 deletions cropmaps/clipper.py
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Expand Up @@ -17,7 +17,7 @@
class Clipper():

@staticmethod
def clipByMask(image, shapefile, store = None, band = None, new = None, resize = False, method = None, ext = 'tif', verbose = False, compress = False):
def clipByMask(image, shapefile, store = None, band = None, new = None, resize = False, method = None, ext = 'tif', verbose = False, compress = False, force_update = False):
"""Mask image based on a shapefile mask.
Args:
Expand Down Expand Up @@ -86,16 +86,17 @@ def clipByMask(image, shapefile, store = None, band = None, new = None, resize =
# New name for output image
out_tif = os.path.join(path, "T{}_{}_{}_{}.{}".format(image.tile_id, image.str_datetime, band, new, ext))

if os.path.exists(out_tif) == True and os.stat(out_tif).st_size != 0:
# Pass if file already exists & it's size is not zero
logging.warning("File {} already exists...".format(os.path.join(path, "T{}_{}_{}_{}.{}".format(image.tile_id, image.str_datetime, band, new, ext))))
attr_name = os.path.splitext(os.path.basename(shapefile))[0]
try:
getattr(image, band)[str(res)][attr_name] = out_tif
except KeyError:
getattr(image, band).update({str(res): {attr_name: out_tif}})

return
if not force_update:
if os.path.exists(out_tif) == True and os.stat(out_tif).st_size != 0:
# Pass if file already exists & it's size is not zero
logging.warning("File {} already exists...".format(os.path.join(path, "T{}_{}_{}_{}.{}".format(image.tile_id, image.str_datetime, band, new, ext))))
attr_name = os.path.splitext(os.path.basename(shapefile))[0]
try:
getattr(image, band)[str(res)][attr_name] = out_tif
except KeyError:
getattr(image, band).update({str(res): {attr_name: out_tif}})

return

if verbose:
if int(resolution) == 20 and resize == True:
Expand Down
3 changes: 0 additions & 3 deletions cropmaps/cube.py
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Expand Up @@ -26,9 +26,6 @@ def generate_cube_paths(eodata:sentimeseries, bands:list, mask:str = None)->list
if mask is None:
for image in eodata.data:
for band in bands:
#if int(image.setResolution(band)) == 20:
# paths.append(getattr(image, band)["10"]["UPSAMPLED"])
#else:
paths.append(getattr(image, band)["10"]["raw"])
else:
for image in eodata.data:
Expand Down
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