Fix BLAS portability issues with Ubuntu 20.04 R builds #224
Workflow file for this run
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| name: R builds | |
| on: | |
| push: | |
| paths: | |
| - 'builder/**' | |
| - 'test/**' | |
| - 'Makefile' | |
| - '.github/workflows/test.yml' | |
| pull_request: | |
| paths: | |
| - 'builder/**' | |
| - 'test/**' | |
| - 'Makefile' | |
| - '.github/workflows/test.yml' | |
| workflow_dispatch: | |
| inputs: | |
| platforms: | |
| description: | | |
| Comma-separated list of platforms. Specify "all" to use all platforms (the default). | |
| required: false | |
| default: 'all' | |
| type: string | |
| r_versions: | |
| description: | | |
| Comma-separated list of R versions. Specify "last-N" to use the | |
| last N minor R versions, or "all" to use all minor R versions since R 3.1. | |
| Defaults to "last-5,3.6.3,devel". | |
| required: false | |
| default: 'last-5,3.6.3,devel' | |
| type: string | |
| permissions: | |
| contents: read | |
| jobs: | |
| setup-matrix: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| platforms: ${{ steps.setup-matrix.outputs.platforms }} | |
| r_versions: ${{ steps.setup-matrix.outputs.r_versions }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up matrix of platforms and R versions | |
| id: setup-matrix | |
| run: | | |
| platforms=$(python test/get_platforms.py ${{ github.event.inputs.platforms }}) | |
| echo "platforms=$platforms" >> $GITHUB_OUTPUT | |
| r_versions=$(python test/get_r_versions.py ${{ github.event.inputs.r_versions }}) | |
| echo "r_versions=$r_versions" >> $GITHUB_OUTPUT | |
| docker-images: | |
| needs: setup-matrix | |
| strategy: | |
| matrix: | |
| platform: ${{ fromJson(needs.setup-matrix.outputs.platforms) }} | |
| runs-on: ubuntu-latest | |
| name: Docker image (${{ matrix.platform }}) | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| with: | |
| install: true | |
| # Enable Docker layer caching without having to push to a registry. | |
| # https://docs.docker.com/build/ci/github-actions/examples/#local-cache | |
| # This may eventually be migrated to the GitHub Actions cache backend, | |
| # which is still considered experimental. | |
| # https://github.com/moby/buildkit#github-actions-cache-experimental | |
| - name: Cache Docker layers | |
| uses: actions/cache@v3 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ matrix.platform }}-buildx-${{ github.sha }} | |
| restore-keys: ${{ matrix.platform }}-buildx- | |
| # Use docker buildx instead of docker-compose here because cache exporting | |
| # does not seem to work as of docker-compose v2.6.0 and buildx v0.8.2, even | |
| # though it works with buildx individually. | |
| - name: Build image | |
| run: | | |
| docker buildx build -t r-builds:${{ matrix.platform }} \ | |
| --file builder/Dockerfile.${{ matrix.platform }} \ | |
| --cache-from "type=local,src=/tmp/.buildx-cache" \ | |
| --cache-to "type=local,dest=/tmp/.buildx-cache-new,mode=max" \ | |
| builder | |
| # Temporary workaround for unbounded GHA cache growth with the local cache mode. | |
| # https://github.com/docker/build-push-action/issues/252 | |
| # https://github.com/moby/buildkit/issues/1896 | |
| - name: Move cache | |
| run: | | |
| rm -rf /tmp/.buildx-cache | |
| mv /tmp/.buildx-cache-new /tmp/.buildx-cache | |
| test: | |
| needs: [setup-matrix, docker-images] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: ${{ fromJson(needs.setup-matrix.outputs.platforms) }} | |
| r_version: ${{ fromJson(needs.setup-matrix.outputs.r_versions) }} | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.platform }} (R ${{ matrix.r_version }}) | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| with: | |
| install: true | |
| - name: Restore cached Docker layers | |
| uses: actions/cache@v3 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ matrix.platform }}-buildx-${{ github.sha }} | |
| restore-keys: ${{ matrix.platform }}-buildx- | |
| - name: Load cached Docker image | |
| run: | | |
| docker buildx build -t r-builds:${{ matrix.platform }} \ | |
| --file builder/Dockerfile.${{ matrix.platform }} \ | |
| --cache-from "type=local,src=/tmp/.buildx-cache" \ | |
| --load \ | |
| builder | |
| - name: Build R | |
| run: | | |
| R_VERSION=${{ matrix.r_version }} make build-r-${{ matrix.platform }} | |
| - name: Test R | |
| run: | | |
| R_VERSION=${{ matrix.r_version }} make test-r-${{ matrix.platform }} |