close #203: MDPI 2019 update (#220)

NEWS.md

@@ -7,6 +7,8 @@ rticles 0.8
 
 - Added header option `correspongdingauthors` to configure multiple corresponding authors for Copernicus Publications (@nuest, #221).
 
+- Updated the template for MDPI to 02/2019 (@dleutnant, #203).
+
 rticles 0.7
 ---------------------------------------------------------------------
 

inst/rmarkdown/templates/mdpi_article/resources/template.tex

@@ -1,10 +1,10 @@
 %  LaTeX support: [email protected]
 %  In case you need support, please attach all files that are necessary for compiling as well as the log file, and specify the details of your LaTeX setup (which operating system and LaTeX version / tools you are using).
 
-% You need to save the "mdpi.cls" and "mdpi.bst" files into the same folder as this template file.
-
 %=================================================================
-\documentclass[$journal$,$type$,$status$,moreauthors,pdftex,10pt,a4paper]{mdpi}
+\documentclass[$journal$,$type$,$status$,moreauthors,pdftex]{mdpi}
+
+% If you would like to post an early version of this manuscript as a preprint, you may use preprint as the journal and change 'submit' to 'accept'. The document class line would be, e.g., \documentclass[preprints,article,accept,moreauthors,pdftex]{mdpi}. This is especially recommended for submission to arXiv, where line numbers should be removed before posting. For preprints.org, the editorial staff will make this change immediately prior to posting.
 
 %% Some pieces required from the pandoc template
 \providecommand{\tightlist}{%
@@ -19,29 +19,32 @@
 $highlighting-macros$
 $endif$
 
-%
 %--------------------
 % Class Options:
 %--------------------
+%----------
 % journal
 %----------
 % Choose between the following MDPI journals:
-% actuators, addictions, admsci, aerospace, agriculture, agronomy, algorithms, animals, antibiotics, antibodies, antioxidants, applsci, arts, asi, atmosphere, atoms, axioms, batteries, bdcc, behavsci, beverages, bioengineering, biology, biomedicines, biomimetics, biomolecules, biosensors, brainsci, buildings, carbon, cancers, catalysts, cells, ceramics, challenges, chemengineering, chemosensors, children, chromatography, climate, coatings, colloids, computation, computers, condensedmatter, cosmetics, cryptography, crystals, cybersecurity, data, dentistry, designs, diagnostics, diseases, diversity, econometrics, economies, education, electrochemistry, electronics, energies, entropy, environments, epigenomes, est, fermentation, fibers, fire, fishes, fluids, foods, forests, fractalfract, futureinternet, galaxies, games, gastrointestdisord, gels, genealogy, genes, geosciences, geriatrics, hazardousmatters, healthcare, heritage, highthroughput, horticulturae, humanities, hydrology, informatics, information, infrastructures, inorganics, insects, instruments, ijerph, ijfs, ijms, ijgi, ijtpp, inventions, j, jcdd, jcm, jcs, jdb, jfb, jfmk, jimaging, jof, jintelligence, jlpea, jmmp, jmse, jpm, jrfm, jsan, land, languages, laws, life, literature, logistics, lubricants, machines, magnetochemistry, make, marinedrugs, materials, mathematics, mca, mti, medsci, medicines, membranes, metabolites, metals, microarrays, micromachines, microorganisms, minerals, modelling, molbank, molecules, mps, nanomaterials, ncrna, neonatalscreening, neuroglia, nitrogen, nutrients, ohbm, particles, pathogens, pharmaceuticals, pharmaceutics, pharmacy, philosophies, photonics, plants, plasma, polymers, polysaccharides, preprints, proceedings, processes, proteomes, publications, quaternary, qubs, recycling, religions, remotesensing, reports, resources, risks, robotics, safety, scipharm, sensors, separations, sexes, sinusitis, socsci, societies, soils, sports, standards, stats, surgeries, sustainability, symmetry, systems, technologies, toxics, toxins, tropicalmed, universe, urbansci, vaccines, vetsci, vibration, viruses, vision, water, wem
+% acoustics, actuators, addictions, admsci, aerospace, agriculture, agriengineering, agronomy, algorithms, animals, antibiotics, antibodies, antioxidants, applsci, arts, asc, asi, atmosphere, atoms, axioms, batteries, bdcc, behavsci , beverages, bioengineering, biology, biomedicines, biomimetics, biomolecules, biosensors, brainsci , buildings, cancers, carbon , catalysts, cells, ceramics, challenges, chemengineering, chemistry, chemosensors, children, cleantechnol, climate, clockssleep, cmd, coatings, colloids, computation, computers, condensedmatter, cosmetics, cryptography, crystals, dairy, data, dentistry, designs , diagnostics, diseases, diversity, drones, econometrics, economies, education, electrochem, electronics, energies, entropy, environments, epigenomes, est, fermentation, fibers, fire, fishes, fluids, foods, forecasting, forests, fractalfract, futureinternet, futurephys, galaxies, games, gastrointestdisord, gels, genealogy, genes, geohazards, geosciences, geriatrics, hazardousmatters, healthcare, heritage, highthroughput, horticulturae, humanities, hydrology, ijerph, ijfs, ijgi, ijms, ijns, ijtpp, informatics, information, infrastructures, inorganics, insects, instruments, inventions, iot, j, jcdd, jcm, jcp, jcs, jdb, jfb, jfmk, jimaging, jintelligence, jlpea, jmmp, jmse, jnt, jof, joitmc, jpm, jrfm, jsan, land, languages, laws, life, literature, logistics, lubricants, machines, magnetochemistry, make, marinedrugs, materials, mathematics, mca, medicina, medicines, medsci, membranes, metabolites, metals, microarrays, micromachines, microorganisms, minerals, modelling, molbank, molecules, mps, mti, nanomaterials, ncrna, neuroglia, nitrogen, notspecified, nutrients, ohbm, particles, pathogens, pharmaceuticals, pharmaceutics, pharmacy, philosophies, photonics, physics, plants, plasma, polymers, polysaccharides, preprints , proceedings, processes, proteomes, psych, publications, quantumrep, quaternary, qubs, reactions, recycling, religions, remotesensing, reports, resources, risks, robotics, safety, sci, scipharm, sensors, separations, sexes, signals, sinusitis, smartcities, sna, societies, socsci, soilsystems, sports, standards, stats, surfaces, surgeries, sustainability, symmetry, systems, technologies, test, toxics, toxins, tropicalmed, universe, urbansci, vaccines, vehicles, vetsci, vibration, viruses, vision, water, wem, wevj
+
 %---------
 % article
 %---------
-% The default type of manuscript is article, but can be replaced by:
-% abstract, addendum, article, benchmark, book, bookreview, briefreport, casereport, changes, comment, commentary, communication, conceptpaper, correction, conferenceproceedings, conferencereport, expressionofconcern, meetingreport, creative, datadescriptor, discussion, editorial, essay, erratum, hypothesis, interestingimages, letter, meetingreport, newbookreceived, opinion, obituary, projectreport, reply, reprint, retraction, review, perspective, protocol, shortnote, supfile, technicalnote, viewpoint
+% The default type of manuscript is "article", but can be replaced by:
+% abstract, addendum, article, benchmark, book, bookreview, briefreport, casereport, changes, comment, commentary, communication, conceptpaper, conferenceproceedings, correction, conferencereport, expressionofconcern, extendedabstract, meetingreport, creative, datadescriptor, discussion, editorial, essay, erratum, hypothesis, interestingimages, letter, meetingreport, newbookreceived, obituary, opinion, projectreport, reply, retraction, review, perspective, protocol, shortnote, supfile, technicalnote, viewpoint
 % supfile = supplementary materials
-% protocol: If you are preparing a "Protocol" paper, please refer to http://www.mdpi.com/journal/mps/instructions for details on its expected structure and content.
+
 %----------
 % submit
 %----------
-% The class option "submit" will be changed to "accept" by the Editorial Office when the paper is accepted. This will only make changes to the frontpage (e.g. the logo of the journal will get visible), the headings, and the copyright information. Also, line numbering will be removed. Journal info and pagination for accepted papers will also be assigned by the Editorial Office.
+% The class option "submit" will be changed to "accept" by the Editorial Office when the paper is accepted. This will only make changes to the frontpage (e.g., the logo of the journal will get visible), the headings, and the copyright information. Also, line numbering will be removed. Journal info and pagination for accepted papers will also be assigned by the Editorial Office.
+
 %------------------
 % moreauthors
 %------------------
 % If there is only one author the class option oneauthor should be used. Otherwise use the class option moreauthors.
+
 %---------
 % pdftex
 %---------
@@ -52,13 +55,17 @@
 \makeatletter
 \setcounter{page}{\@firstpage}
 \makeatother
-\articlenumber{x}
-\doinum{10.3390/------}
 \pubvolume{xx}
-\pubyear{2018}
-\copyrightyear{2018}
-\externaleditor{Academic Editor: name}
+\issuenum{1}
+\articlenumber{5}
+\pubyear{2019}
+\copyrightyear{2019}
+%\externaleditor{Academic Editor: name}
 \history{Received: date; Accepted: date; Published: date}
+\updates{yes} % If there is an update available, un-comment this line
+
+%% MDPI internal command: uncomment if new journal that already uses continuous page numbers
+%\continuouspages{yes}
 
 %------------------------------------------------------------------
 % The following line should be uncommented if the LaTeX file is uploaded to arXiv.org
@@ -121,6 +128,10 @@
 %\MSC{}
 %\JEL{}
 
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+% Only for the journal Diversity
+%\LSID{\url{http://}}
+
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 % Only for the journal Applied Sciences:
 %\featuredapplication{Authors are encouraged to provide a concise description of the specific application or a potential application of the work. This section is not mandatory.}
@@ -145,7 +156,6 @@
 
 \begin{document}
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%% Only for the journal Gels: Please place the Experimental Section after the Conclusions
 
 $body$
 
@@ -191,22 +201,21 @@
 \input{"$appendix$"}
 $endif$
 
-
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 % Citations and References in Supplementary files are permitted provided that they also appear in the reference list here.
 
 %=====================================
 % References, variant A: internal bibliography
 %=====================================
-% \reftitle{References}
-% \begin{thebibliography}{999}
-% % Reference 1
-% \bibitem[Author1(year)]{ref-journal}
-% Author1, T. The title of the cited article. {\em Journal Abbreviation} {\bf 2008}, {\em 10}, 142-149, DOI.
-% % Reference 2
-% \bibitem[Author2(year)]{ref-book}
-% Author2, L. The title of the cited contribution. In {\em The Book Title}; Editor1, F., Editor2, A., Eds.; Publishing House: City, Country, 2007; pp. 32-58, ISBN.
-% \end{thebibliography}
+%\reftitle{References}
+%\begin{thebibliography}{999}
+% Reference 1
+%\bibitem[Author1(year)]{ref-journal}
+%Author1, T. The title of the cited article. {\em Journal Abbreviation} {\bf 2008}, {\em 10}, 142--149.
+% Reference 2
+%\bibitem[Author2(year)]{ref-book}
+%Author2, L. The title of the cited contribution. In {\em The Book Title}; Editor1, F., Editor2, A., Eds.; Publishing House: City, Country, 2007; pp. 32--58.
+%\end{thebibliography}
 
 % The following MDPI journals use author-date citation: Arts, Econometrics, Economies, Genealogy, Humanities, IJFS, JRFM, Laws, Religions, Risks, Social Sciences. For those journals, please follow the formatting guidelines on http://www.mdpi.com/authors/references
 % To cite two works by the same author: \citeauthor{ref-journal-1a} (\citeyear{ref-journal-1a}, \citeyear{ref-journal-1b}). This produces: Whittaker (1967, 1975)
@@ -227,5 +236,13 @@
 \sampleavailability{$sampleavailability$}
 $endif$
 
+%% for journal Sci
+%\reviewreports{\\
+%Reviewer 1 comments and authors’ response\\
+%Reviewer 2 comments and authors’ response\\
+%Reviewer 3 comments and authors’ response
+%}
+
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \end{document}
+

inst/rmarkdown/templates/mdpi_article/skeleton/chicago2.bst

@@ -155,6 +155,7 @@ ENTRY
     chapter
     edition
     editor
+    doi
     howpublished
     institution
     journal
@@ -1008,6 +1009,22 @@ FUNCTION {output.bibitem}
   before.all 'output.state :=
 }
 
+%% For printing DOI numbers (it is a hyperlink but printed in black)
+FUNCTION {format.doi}
+{ doi empty$
+  { ""  }
+  {"\href{https://doi.org/" doi * "}" * }
+  if$
+}
+
+FUNCTION {formatfull.doi}
+{ doi empty$
+  { ""  }
+  {"doi:{\changeurlcolor{black}\href{https://doi.org/" doi * "}{\detokenize{" * doi * "}}}" * }
+  if$
+}
+
+
 FUNCTION {article}
 { output.bibitem
   format.authors
@@ -1027,6 +1044,7 @@ FUNCTION {article}
   if$
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1061,6 +1079,7 @@ FUNCTION {book}
   if$
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1077,6 +1096,7 @@ FUNCTION {booklet}
   address output
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1115,6 +1135,7 @@ FUNCTION {inbook}
   if$
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1146,6 +1167,7 @@ FUNCTION {incollection}
   if$
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1176,6 +1198,7 @@ FUNCTION {inproceedings}
   if$
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1205,6 +1228,7 @@ FUNCTION {manual}
 %  organization output
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1223,6 +1247,7 @@ FUNCTION {mastersthesis}
   address output
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1237,6 +1262,7 @@ FUNCTION {misc}
   howpublished output
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1255,6 +1281,7 @@ FUNCTION {phdthesis}
   address output
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1279,6 +1306,7 @@ FUNCTION {proceedings}
   publisher output.colon
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }
 
@@ -1298,6 +1326,7 @@ FUNCTION {techreport}
   address output
   new.block
   note output
+  formatfull.doi output
   fin.entry
 }