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make changes to paper README
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rusandris committed Jul 18, 2024
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Our package `StateTransitionNetworks.jl` and other functions and scripts to generate figures are written in the Julia programming language.

These examples are likely but not guaranteed to work with the latest version of the package. To make sure they work, use the `v0.4.0-pub` release.

For Julia installation instructions see: https://julialang.org/downloads/

Run everything from the `stn_paper/` dir as working directory to avoid path errors.

#### INSTALL AND SETUP

Once you have successfully downloaded the `stn_paper/` directory (or by clicking on the `Download ZIP` option on Github, or by cloning the repository `git clone https://github.com/rusandris/StateTransitionNetworks.jl.git `), navigate to `stn_paper/` directory and follow these steps:
Once you have successfully downloaded the `stn_paper/` directory (or by clicking on the `Download ZIP` option on Github, or by cloning the repository `git clone https://github.com/rusandris/StateTransitionNetworks.jl.git --branch v0.4.0-pub` ), navigate to `stn_paper/` directory and follow these steps:

1. Activate the environment:
* in the `stn_paper/` directory open a Julia `REPL`, activate the env with: `] activate .` (the `]`is needed to enter package mode (blue) of the `REPL` and only needed once)
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* if you only have the `stn_paper/` dir with the scripts, or you use Windows:

` add https://github.com/rusandris/StateTransitionNetworks.jl.git`
` add https://github.com/rusandris/StateTransitionNetworks.jl.git #v0.4.0-pub `

* if you downloaded the whole repository: ` add ../../StateTransitionNetworks.jl/`

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