Test data to be used for automated testing with the nf-core pipelines
⚠️ Do not merge your test data tomaster
! Each pipeline has a dedicated branch (and a special one for modules)
nf-core is a collection of high quality Nextflow pipelines. This repository contains various files for CI and unit testing of nf-core pipelines and infrastructure.
The principle for nf-core test data is as small as possible, as large as necessary. Please see the guidelines for more detailed information. Always ask for guidance on the nf-core slack before adding new test data.
nf-core/test-datasets comes with documentation in the docs/
directory:
Due the large number of large files in this repository for each pipeline, we highly recommend cloning only the branches you would use.
git clone <url> --single-branch --branch <pipeline/modules/branch_name>
To subsequently clone other branches1
git remote set-branches --add origin [remote-branch]
git fetch
For further information or help, don't hesitate to get in touch on our Slack organisation (a tool for instant messaging).
Footnotes
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From stackoverflow ↩