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adugourd authored Jul 15, 2024
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## tutorial to use MOFA nad COSMOS

[Here](https://saezlab.github.io/cosmosR/articles/MOFA_to_COSMOS.html) you can find an extensive tutorial showing how to use MOFA and COSMOS with the NCI60 dataset. This is an extensive tutorial, if you wish to get a quicker plug and play introduction to COSMOS, see below.
[Here](https://github.com/saezlab/Factor_COSMOS/) you can find an extensive tutorial showing how to use MOFA and COSMOS with the NCI60 dataset. This is an extensive tutorial, if you wish to get a quicker plug and play introduction to COSMOS, see below.

!!! THIS is were you can find the input data and the pre-processing scripts that corespond to the featured vignette !!!

## Tutorial (NCI60 playground)

We made a repository that contains pre-processed inputs and an example script to use cosmos with the NCI60 RNA+metabolomic datasets.
You can find the repository [here](https://saezlab.github.io/cosmosR/articles/NCI60_tutorial.html).
You can find the repository [here](https://github.com/saezlab/COSMOS_basic).

!!! THIS is were you can find the input data and the pre-processing scripts that corespond to the featured vignette !!!

## Access

The meta PKN used with the biorXiv version of COSMOS is available [here](http://metapkn.omnipathdb.org/).
The meta PKN used with the older biorXiv version of COSMOS (2021) is available [here](http://metapkn.omnipathdb.org/).

An updated meta PKN is available with the package (using data(meta_network) in R)

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