Operation timed out (codeload.github.com:443)

Failed to download action 'https://api.github.com/repos/r-lib/actions/tarball/faf8dab163d42f40068656974683ffa606ec27a3'. Error: nodename nor servname provided, or not known (codeload.github.com:443)

Back off 23.996 seconds before retry.

Failed to download action 'https://api.github.com/repos/r-lib/actions/tarball/faf8dab163d42f40068656974683ffa606ec27a3'. Error: Operation timed out (api.github.com:443)

Back off 29.801 seconds before retry.

Missing link or links in documentation object 'run_gsva.Rd':

Files in the 'vignettes' directory but no files in 'inst/doc':

Directory 'inst/doc' does not exist.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:

Failed to save: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2