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Merge pull request #267 from bnymnsen/master
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`string` url update
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deeenes authored Nov 2, 2023
2 parents b0916d5 + da49e11 commit 8bbc1e4
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Showing 2 changed files with 7 additions and 6 deletions.
1 change: 1 addition & 0 deletions pypath/inputs/uniprot.py
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import pypath.resources.urls as urls
import pypath.share.curl as curl
import pypath.share.settings as settings
import pypath.share.session as session_mod
import pypath.share.common as common
import pypath.share.constants as constants
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12 changes: 6 additions & 6 deletions pypath/resources/urls.py
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Expand Up @@ -958,13 +958,13 @@
},
'string': {
'label': 'STRING',
'actions': 'https://stringdb-static.org/download/'
'protein.actions.v11.0/%u.protein.actions.v11.0.txt.gz',
'links': 'https://stringdb-static.org/download/protein.links.detailed.v12.0/%u'
'actions': 'https://stringdb-downloads.org/download/'
'protein.actions.v12.0/%u.protein.actions.v12.0.txt.gz',
'links': 'https://stringdb-downloads.org/download/protein.links.detailed.v12.0/%u'
'.protein.links.detailed.v12.0.txt.gz',
'physical_links': 'https://stringdb-static.org/download/protein.physical.links.detailed.v12.0/%u'
'physical_links': 'https://stringdb-downloads.org/download/protein.physical.links.detailed.v12.0/%u'
'.protein.physical.links.detailed.v12.0.txt.gz',
'species': 'https://stringdb-static.org/download/species.v12.0.txt'
'species': 'https://stringdb-downloads.org/download/species.v12.0.txt'
},
'wikipw': {
'label': 'WikiPathways human biopax',
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'unichem': {
'label': 'Mapping between drug compound IDs',
'sources': 'https://www.ebi.ac.uk/unichem/legacy/ucquery/listSources',
'mapping': 'ftp://ftp.ebi.ac.uk/pub/databases/chembl/UniChem/data/'
'mapping': 'https://ftp.ebi.ac.uk/pub/databases/chembl/UniChem/data/'
'wholeSourceMapping/src_id%s/src%ssrc%s.txt.gz',
},
'redhuman': {
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