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@sagc-bioinformatics

SAGC - Bioinformatics

South Australian Genomics Centre

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  1. mgikit mgikit Public

    mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

    Rust 11 1

  2. modules modules Public

    Module files for Nextflow workflows

    Nextflow 2 4

  3. SAGC_5mCMethylation_tutorial SAGC_5mCMethylation_tutorial Public

    WGBS tutorial

    HTML 2 4

  4. nextflow-vs-snakemake-2024 nextflow-vs-snakemake-2024 Public

    A homepage for our 2024 bioinformatics workflow managers workshop.

    HTML 2 2

  5. nextflow-example-workflow-2024 nextflow-example-workflow-2024 Public

    A complete example workflow for the 2024 nextflow-vs-snakemake workshop (https://github.com/sagc-bioinformatics/nextflow-vs-snakemake-2024)

    Nextflow 2 1

  6. nf-rnaseq-sagc nf-rnaseq-sagc Public

    RNAseq quantification pipeline

    Nextflow 1 2

Repositories

Showing 10 of 28 repositories
  • demultiplex Public Forked from nf-core/demultiplex

    Demultiplexing pipeline for sequencing data

    sagc-bioinformatics/demultiplex’s past year of commit activity
    Nextflow 0 MIT 41 0 0 Updated Dec 17, 2024
  • test-datasets Public Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    sagc-bioinformatics/test-datasets’s past year of commit activity
    0 MIT 363 0 0 Updated Dec 17, 2024
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    sagc-bioinformatics/MultiQC’s past year of commit activity
    JavaScript 0 GPL-3.0 613 0 0 Updated Dec 12, 2024
  • filesender-mp Public

    Adapting filesender for SAGC use, adding functionalities

    sagc-bioinformatics/filesender-mp’s past year of commit activity
    Jupyter Notebook 1 1 1 0 Updated Nov 7, 2024
  • abacbs2024_workshop Public

    SAGC STOmics workshop for ABACBS2024

    sagc-bioinformatics/abacbs2024_workshop’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 6, 2024
  • workshop_nfRNAseq Public

    https://sagc-bioinformatics.github.io/workshop_nfRNAseq/

    sagc-bioinformatics/workshop_nfRNAseq’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 14, 2024
  • mgikit Public

    mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

    sagc-bioinformatics/mgikit’s past year of commit activity
    Rust 11 1 2 0 Updated Oct 8, 2024
  • nextflow-example-workflow-2024 Public

    A complete example workflow for the 2024 nextflow-vs-snakemake workshop (https://github.com/sagc-bioinformatics/nextflow-vs-snakemake-2024)

    sagc-bioinformatics/nextflow-example-workflow-2024’s past year of commit activity
    Nextflow 2 1 0 0 Updated Sep 17, 2024
  • nextflow-vs-snakemake-2024 Public

    A homepage for our 2024 bioinformatics workflow managers workshop.

    sagc-bioinformatics/nextflow-vs-snakemake-2024’s past year of commit activity
    HTML 2 2 0 0 Updated Aug 27, 2024
  • nectar-workshop-deployment Public

    Nectar setup for 2024 nextflow vs snakemake workshop

    sagc-bioinformatics/nectar-workshop-deployment’s past year of commit activity
    Shell 0 0 0 0 Updated Aug 20, 2024
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