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<section id="r-ide">
<h1>R IDE<a class="headerlink" href="#r-ide" title="Link to this heading"></a></h1>
<div class="admonition-disclaimer admonition">
<p class="admonition-title">DISCLAIMER</p>
<p>R IDE in CoCalc is the open source edition of RStudio. Posit Software, PBC is in no way associated with CoCalc.</p>
</div>
<p>There are a number of ways to use R in CoCalc.</p>
<section id="collaborative-x11-application">
<h2>Collaborative X11 Application<a class="headerlink" href="#collaborative-x11-application" title="Link to this heading"></a></h2>
<p>You can create <a class="reference internal" href="x11.html"><span class="doc">X11 Graphical Desktop</span></a>, then click <strong>R IDE</strong> in the application list at the bottom left and wait about 20 seconds. The advantage is real-time collaboration just as with any other X11 application, but the response time may be slow.</p>
</section>
<section id="notebook-server">
<h2>Notebook Server<a class="headerlink" href="#notebook-server" title="Link to this heading"></a></h2>
<p>Click on the <strong>Servers / Notebook Servers</strong> tab and launch <strong>R IDE</strong> :</p>
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<h2>Compute Server<a class="headerlink" href="#compute-server" title="Link to this heading"></a></h2>
<p>If you need more powerful compute resources, use <a class="reference internal" href="compute_server.html"><span class="doc">Compute Servers</span></a> with <strong>R Statistics</strong> image. Here CoCalc’s CEO and Founder William Stein explains how to run it:</p>
<center><iframe width="640" height="360" src="https://www.youtube.com/embed/Owq90O0vLJo?si=Im_EpK-uJwSkJSSW" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe></center>
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<h2>Other Ways<a class="headerlink" href="#other-ways" title="Link to this heading"></a></h2>
<p>You can also use R in CoCalc via:</p>
<ul class="simple">
<li><p>Jupyter notebooks with the R kernel. See <a class="reference internal" href="jupyter-start.html#jupyter-kernels"><span class="std std-ref">Jupyter Kernels</span></a>.</p></li>
<li><p>Creating a file ending in .r and running it. You can keep your source file in one pane with a Linux terminal beside it to run the program. See <a class="reference internal" href="terminal.html#terminal-editor-panel"><span class="std std-ref">Terminal Environment in Split Frame with File Editor</span></a>.</p></li>
<li><p><a class="reference internal" href="frame-editor.html#edit-rmd"><span class="std std-ref">R Markdown</span></a> (Rmd file).</p></li>
<li><p><a class="reference internal" href="latex-faq.html#latex-knitr"><span class="std std-ref">Knitr</span></a> (rnw or Rtex file).</p></li>
<li><p>Sage worksheet with R (sagews file and “%r” mode). See Custom “Mode Commands” in Sage Worksheets under <a class="reference internal" href="sagews.html#sagews-wiki"><span class="std std-ref">Sage Worksheets</span></a>.</p></li>
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61 changes: 61 additions & 0 deletions _sources/R_IDE.rst.txt
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R IDE
=====

.. admonition:: DISCLAIMER

R IDE in CoCalc is the open source edition of RStudio. Posit Software, PBC is in no way associated with CoCalc.

There are a number of ways to use R in CoCalc.


Collaborative X11 Application
-----------------------------
You can create :doc:`x11`, then click **R IDE** in the application list at the bottom left and wait about 20 seconds. The advantage is real-time collaboration just as with any other X11 application, but the response time may be slow.


Notebook Server
---------------

Click on the **Servers / Notebook Servers** tab and launch **R IDE** :

.. figure:: img/R_IDE_server.png
:width: 90%
:align: center
:alt: Launching R IDE Server

Launching R IDE Server

.. raw:: html

<center><iframe
width="640" height="360"
src="https://www.youtube.com/embed/Hl9MnHfuwCQ?si=JdM8eQb5T5pBKM1u"
title="YouTube video player"
frameborder="0"
allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share"
allowfullscreen>
</iframe></center>


Compute Server
--------------

If you need more powerful compute resources, use :doc:`compute_server` with **R Statistics** image. Here CoCalc's CEO and Founder William Stein explains how to run it:

.. raw:: html

<center><iframe width="640" height="360" src="https://www.youtube.com/embed/Owq90O0vLJo?si=Im_EpK-uJwSkJSSW" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe></center>
<br/>


Other Ways
----------

You can also use R in CoCalc via:

- Jupyter notebooks with the R kernel. See :ref:`jupyter-kernels`.
- Creating a file ending in .r and running it. You can keep your source file in one pane with a Linux terminal beside it to run the program. See :ref:`terminal-editor-panel`.
- :ref:`edit-rmd` (Rmd file).
- :ref:`latex-knitr` (rnw or Rtex file).
- Sage worksheet with R (sagews file and "%r" mode). See Custom “Mode Commands” in Sage Worksheets under :ref:`sagews-wiki`.

11 changes: 11 additions & 0 deletions _sources/backups.rst.txt
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Expand Up @@ -15,6 +15,17 @@ Snapshots
All files in every project are snapshotted every couple of minutes.
You can browse your snapshots by clicking the **"Backups"** link at the upper right of the :doc:`explorer` file listing.

.. raw:: html

<center><iframe
width="640" height="360"
src="https://www.youtube.com/embed/VPp-AleMUXg?si=65Q0vbU8K4A2AUF5"
title="YouTube video player"
frameborder="0"
allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share"
allowfullscreen>
</iframe></center>

*Snapshot storage does not count against your disk space quota.* We provide all snapshot space for no additional charge.


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11 changes: 11 additions & 0 deletions _sources/howto/pluto.rst.txt
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Expand Up @@ -14,6 +14,17 @@ Here are instructions for running a Pluto notebook on CoCalc.
Launch a Pluto Notebook
***********************

.. raw:: html

<center><iframe
width="640" height="360"
src="https://www.youtube.com/embed/WMu2cCT6XVI?si=2i0Jasz4iDmq_f3k"
title="YouTube video player"
frameborder="0"
allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share"
allowfullscreen>
</iframe></center>

1. Click :doc:`../plus-new` to open the new file dialog.

2. Click "Pluto server...".
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22 changes: 22 additions & 0 deletions _sources/latex-faq.rst.txt
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Expand Up @@ -326,6 +326,17 @@ This is frequently used as part of `reproducible research <https://en.wikipedia.
SageTeX
^^^^^^^^^^

.. raw:: html

<center><iframe
width="640" height="360"
src="https://www.youtube.com/embed/K-5CqXwRHgA?si=lX5bNDCtcUEoESFF"
title="YouTube video player"
frameborder="0"
allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share"
allowfullscreen>
</iframe></center>

Any ``.tex`` file loading the ``sagetex`` package is automatically processed via [[SageMath]].
First, Sage code is extracted into a ``.sage`` file, then ``sage ...`` evaluates that file, and finally the LaTeX engine creates the PDF document by replacing all snippets of Sage code by their evaluated result.
CoCalc handles all details for you!
Expand All @@ -348,6 +359,17 @@ Besides that, the `SageMath Documentation <http://doc.sagemath.org/html/en/>`_ c
PythonTeX
^^^^^^^^^^^^^^

.. raw:: html

<center><iframe
width="640" height="360"
src="https://www.youtube.com/embed/sN--nWPyFuk?si=4y13tJQvRJsPrn26"
title="YouTube video player"
frameborder="0"
allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share"
allowfullscreen>
</iframe></center>

`PythonTeX <https://ctan.org/pkg/pythontex>`_ follows the same spirit as SageTeX.
Embedded Python commands and blocks of code are extracted into a ``.py`` file,
Python 3 evaluates them,
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