ribo-seq-snakemake

Snakemake pipeline for Ribo-Seq analysis

Name		Name	Last commit message	Last commit date
Latest commit History 26 Commits
configs		configs
images		images
isoform_level		isoform_level
rsem_star		rsem_star
scripts		scripts
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
Snakefile		Snakefile
Snakefile.master		Snakefile.master
Snakefile.master.ribotaper		Snakefile.master.ribotaper
Snakefile.riboraptor		Snakefile.riboraptor
Snakefile_fastq_multilane.MSI1		Snakefile_fastq_multilane.MSI1
Snakefile_fastq_multilane.snake		Snakefile_fastq_multilane.snake
Snakefile_fastq_singlelane		Snakefile_fastq_singlelane
Snakefile_fastq_singlelane.MSI		Snakefile_fastq_singlelane.MSI
Snakefile_sra_se		Snakefile_sra_se
Snakefile_sra_se.Reut_Shalgi		Snakefile_sra_se.Reut_Shalgi
cluster.master.yaml		cluster.master.yaml
cluster.riboraptor.slurm.yaml		cluster.riboraptor.slurm.yaml
cluster.riboraptor.yaml		cluster.riboraptor.yaml
cluster.yaml		cluster.yaml
jobscript.sh		jobscript.sh
submitall.Reut_Shalgi.sh		submitall.Reut_Shalgi.sh
submitall.master.sh		submitall.master.sh
submitall.riboraptor.sh		submitall.riboraptor.sh
submitall.riboraptor.slurm.sh		submitall.riboraptor.slurm.sh
submitall.sh		submitall.sh
submitall.single_lane.sh		submitall.single_lane.sh
submitall_ribo.sh		submitall_ribo.sh
touchall.sh		touchall.sh

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