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sami-chaaban authored Oct 29, 2024
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If you want instead want to rank by local interaction score (LIS) (Kim et al., 2024), you can pass ```--rank_by lis```. While iptm and ptm can be used for ranking as well, alphascreen relies on your Alphafold/Colabfold implementation writing the iptm and ptm scores to a *scores.txt* file within the individual results directories. It should have the same number of lines as there are models, each line containing the information in this format:

*iptm:0.09 ptm:0.62*
*iptm:0.02 ptm:0.63*
*iptm:0.09 ptm:0.62*<br>
*iptm:0.02 ptm:0.63*<br>
*...*

These values are just an example. Note the presence/absence of spaces and placement of colons.
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## License<a name="license"></a>

This project is licensed under the MIT License - see the [LICENSE.txt](https://github.com/sami-chaaban/alphascreen/blob/main/LICENSE.txt) file for details.
This project is licensed under the MIT License - see the [LICENSE.txt](https://github.com/sami-chaaban/alphascreen/blob/main/LICENSE.txt) file for details.

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