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samtools · Oct 17, 2022 · 4199d7d · 4199d7d
1 parent 313e28c
commit 4199d7d
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/src/main/java/htsjdk/samtools/cram/compression/rans/ransnx16/RANSNx16Encode.java b/src/main/java/htsjdk/samtools/cram/compression/rans/ransnx16/RANSNx16Encode.java
@@ -24,11 +24,9 @@ public ByteBuffer compress(final ByteBuffer inBuffer, final RANSNx16Params ransN
             return EMPTY_BUFFER;
         }
         final ByteBuffer outBuffer = allocateOutputBuffer(inBuffer.remaining());
-        final int formatFlags = ransNx16Params.getFormatFlags() & 0xFF;
+        final int formatFlags = ransNx16Params.getFormatFlags();
         outBuffer.put((byte) (formatFlags)); // one byte for formatFlags
 
-        // TODO: add methods to handle various flags
-
         //  NoSize
         if (!ransNx16Params.isNosz()) {
             // original size is not recorded

diff --git a/src/main/java/htsjdk/samtools/cram/compression/rans/ransnx16/RANSNx16Params.java b/src/main/java/htsjdk/samtools/cram/compression/rans/ransnx16/RANSNx16Params.java
@@ -36,7 +36,7 @@ public ORDER getOrder() {
     }
 
     public int getFormatFlags(){
-        // Least significant 7 bits of the format
+        // first byte of the encoded stream
         return formatFlags & FORMAT_FLAG_MASK;
     }