Skip to content

Commit

Permalink
add version for trio process
Browse files Browse the repository at this point in the history
  • Loading branch information
yumisims committed Sep 23, 2024
1 parent 47ccc76 commit 36730fc
Show file tree
Hide file tree
Showing 2 changed files with 7 additions and 3 deletions.
3 changes: 2 additions & 1 deletion subworkflows/local/genomescope_model.nf
Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,8 @@ workflow GENOMESCOPE_MODEL {
ch_trio_data.pat,
ch_trio_data.mat
)

ch_versions = ch_versions.mix(TRIO_PROCESS.out.versions)

//
// MODULE: GENERATE GENOMESCOPE KMER COVERAGE MODEL
//
Expand Down
7 changes: 5 additions & 2 deletions subworkflows/local/trio_mode.nf
Original file line number Diff line number Diff line change
Expand Up @@ -11,11 +11,14 @@ workflow TRIO_MODE {

main:
ch_versions = Channel.empty()


//
// MODULE: GENERATE TRIO DATABASES AND KTABS FOR BOTH PAT AND MAT
//
YAK_COUNT_PAT(patreads)
FASTK_PAT(patreads)
patdb_ch = YAK_COUNT_PAT.out.yak
patktab_ch = FASTK_PAT.out.ktab
patktab_ch = FASTK_PAT.out.ktab
ch_versions = ch_versions.mix(YAK_COUNT_PAT.out.versions)
ch_versions = ch_versions.mix(FASTK_PAT.out.versions)
YAK_COUNT_MAT(matreads)
Expand Down

0 comments on commit 36730fc

Please sign in to comment.