bug in awk_filter_reads

sanger-tol · Jul 11, 2024 · 88eeafb · 88eeafb
1 parent cc28b04
commit 88eeafb
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/bin/awk_filter_reads.sh b/bin/awk_filter_reads.sh
@@ -1 +1,2 @@
-awk 'BEGIN{OFS="\t"}{if($1 ~ /^@/) {print} else {$2=and($2,compl(2048)); print $1,$2,$3,$4,$5,$6,$7,$8,$9,$10,$11}}'
+#remove the read number added earlier --yy5
+awk 'BEGIN{OFS="\t"}{if($1 ~ /^@/) {print} else {$2=and($2,compl(2048)); print substr($1,2),$2,$3,$4,$5,$6,$7,$8,$9,$10,$11}}'