-
Notifications
You must be signed in to change notification settings - Fork 2
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Transferred docs from documentation branch
- Loading branch information
Ksenia Krasheninnikova
committed
Nov 15, 2023
1 parent
9a2dc32
commit 9f369b7
Showing
23 changed files
with
2,138 additions
and
150 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Binary file not shown.
Binary file not shown.
Binary file not shown.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,143 @@ | ||
<mxfile host="app.diagrams.net" modified="2023-11-15T09:52:29.435Z" agent="Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/117.0.0.0 Safari/537.36" etag="parKIF83_5zZ88P2X0ZS" version="22.1.0" type="device"> | ||
<diagram name="Page-1" id="eF7tXEJZUrHQdcSFM5dA"> | ||
<mxGraphModel dx="1509" dy="839" grid="1" gridSize="10" guides="1" tooltips="1" connect="1" arrows="1" fold="1" page="1" pageScale="1" pageWidth="1169" pageHeight="827" math="0" shadow="0"> | ||
<root> | ||
<mxCell id="0" /> | ||
<mxCell id="1" parent="0" /> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-1" value="" style="group;aspect=fixed;" vertex="1" connectable="0" parent="1"> | ||
<mxGeometry x="140" y="130" width="70" height="77.78" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-2" value="" style="shape=note;whiteSpace=wrap;html=1;backgroundOutline=1;darkOpacity=0.05;rounded=1;size=20;strokeWidth=2;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-1"> | ||
<mxGeometry x="3.888888888888889" width="62.22222222222222" height="77.78" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-3" value="<font size="1" face="Maven Pro" color="#ffffff"><b style="font-size: 14px;">Primary assembly</b></font>" style="rounded=1;whiteSpace=wrap;html=1;strokeWidth=2;fillColor=#000000;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-1"> | ||
<mxGeometry y="31.112000000000002" width="70" height="31.112000000000002" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-13" value="" style="group;aspect=fixed;" vertex="1" connectable="0" parent="1"> | ||
<mxGeometry x="143" y="432" width="75" height="82.89" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-14" value="" style="shape=note;whiteSpace=wrap;html=1;backgroundOutline=1;darkOpacity=0.05;rounded=1;size=20;strokeWidth=2;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-13"> | ||
<mxGeometry x="3.947368421052632" width="63.15789473684211" height="78.94285714285715" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-15" value="<font data-font-src="https://fonts.googleapis.com/css?family=Maven+Pro" face="Maven Pro" color="#ffffff"><b><font style="font-size: 20px;">Fastq</font></b></font>" style="rounded=1;whiteSpace=wrap;html=1;strokeWidth=2;fillColor=#000000;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-13"> | ||
<mxGeometry y="31.57714285714286" width="71.05263157894737" height="31.57714285714286" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-16" value="" style="shape=note;whiteSpace=wrap;html=1;backgroundOutline=1;darkOpacity=0.05;rounded=1;size=20;strokeWidth=2;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-13"> | ||
<mxGeometry x="7.894736842105264" y="3.9471428571428575" width="63.15789473684211" height="78.94285714285715" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-17" value="<font data-font-src="https://fonts.googleapis.com/css?family=Maven+Pro" face="Maven Pro" color="#ffffff"><b><font style="font-size: 15px;">FastK database</font></b></font>" style="rounded=1;whiteSpace=wrap;html=1;strokeWidth=2;fillColor=#000000;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-13"> | ||
<mxGeometry x="3.947368421052632" y="35.52428571428572" width="71.05263157894737" height="31.57714285714286" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-20" value="gfastats pri" style="text;html=1;strokeColor=none;fillColor=none;align=center;verticalAlign=middle;whiteSpace=wrap;rounded=0;" vertex="1" parent="1"> | ||
<mxGeometry x="261" y="82" width="60" height="30" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-22" value="gfastats alt" style="text;html=1;strokeColor=none;fillColor=none;align=center;verticalAlign=middle;whiteSpace=wrap;rounded=0;" vertex="1" parent="1"> | ||
<mxGeometry x="260" y="196" width="60" height="30" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-31" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;exitX=1;exitY=0.5;exitDx=0;exitDy=0;fillColor=#60a917;strokeColor=#2D7600;" edge="1" parent="1"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="210" y="285" as="sourcePoint" /> | ||
<mxPoint x="290" y="245" as="targetPoint" /> | ||
<Array as="points"> | ||
<mxPoint x="270" y="285" /> | ||
<mxPoint x="290" y="265" /> | ||
</Array> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-32" value="" style="ellipse;whiteSpace=wrap;html=1;aspect=fixed;rounded=1;rotation=0;strokeWidth=2;" vertex="1" parent="1"> | ||
<mxGeometry x="280" y="233" width="20" height="20" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-34" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;exitX=1;exitY=0.5;exitDx=0;exitDy=0;" edge="1" parent="1"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="210" y="170" as="sourcePoint" /> | ||
<mxPoint x="290" y="130" as="targetPoint" /> | ||
<Array as="points"> | ||
<mxPoint x="270" y="170" /> | ||
<mxPoint x="290" y="150" /> | ||
</Array> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-35" value="" style="ellipse;whiteSpace=wrap;html=1;aspect=fixed;rounded=1;rotation=0;strokeWidth=2;" vertex="1" parent="1"> | ||
<mxGeometry x="280" y="120" width="20" height="20" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-39" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;exitX=0.985;exitY=0.408;exitDx=0;exitDy=0;exitPerimeter=0;" edge="1" parent="1" source="XOOXr_gw0LySKT0VeDug-3"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="321" y="175" as="sourcePoint" /> | ||
<mxPoint x="401" y="135" as="targetPoint" /> | ||
<Array as="points"> | ||
<mxPoint x="381" y="175" /> | ||
<mxPoint x="401" y="155" /> | ||
</Array> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-41" value="BUSCO" style="text;html=1;strokeColor=none;fillColor=none;align=center;verticalAlign=middle;whiteSpace=wrap;rounded=0;" vertex="1" parent="1"> | ||
<mxGeometry x="371" y="90" width="60" height="30" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-43" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;exitX=1;exitY=0.25;exitDx=0;exitDy=0;fillColor=#d80073;strokeColor=#A50040;entryX=1;entryY=1;entryDx=0;entryDy=0;" edge="1" parent="1" target="XOOXr_gw0LySKT0VeDug-54"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="211.5" y="377.52" as="sourcePoint" /> | ||
<mxPoint x="407.0710678118653" y="144.07106781186542" as="targetPoint" /> | ||
<Array as="points"> | ||
<mxPoint x="331.5" y="377.52" /> | ||
<mxPoint x="386.5" y="377.52" /> | ||
<mxPoint x="406.5" y="357.52" /> | ||
</Array> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-45" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;entryX=0;entryY=0.5;entryDx=0;entryDy=0;" edge="1" parent="1"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="210" y="184.74" as="sourcePoint" /> | ||
<mxPoint x="585.0000000000001" y="184.99999999999994" as="targetPoint" /> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-46" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;exitX=0.892;exitY=-0.012;exitDx=0;exitDy=0;entryX=0.5;entryY=1;entryDx=0;entryDy=0;exitPerimeter=0;fillColor=#60a917;strokeColor=#2D7600;" edge="1" parent="1" target="XOOXr_gw0LySKT0VeDug-55"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="200.27999999999997" y="275.52" as="sourcePoint" /> | ||
<mxPoint x="595" y="163" as="targetPoint" /> | ||
<Array as="points"> | ||
<mxPoint x="575" y="276" /> | ||
<mxPoint x="595" y="256" /> | ||
</Array> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-47" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;exitX=1;exitY=0;exitDx=0;exitDy=0;fillColor=#fa6800;strokeColor=#C73500;entryX=1;entryY=1;entryDx=0;entryDy=0;" edge="1" parent="1" target="XOOXr_gw0LySKT0VeDug-55"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="219" y="491" as="sourcePoint" /> | ||
<mxPoint x="602.3600000000001" y="131.64" as="targetPoint" /> | ||
<Array as="points"> | ||
<mxPoint x="584" y="491" /> | ||
<mxPoint x="604" y="471" /> | ||
</Array> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-48" value="MerquryFK" style="text;html=1;strokeColor=none;fillColor=none;align=center;verticalAlign=middle;whiteSpace=wrap;rounded=0;" vertex="1" parent="1"> | ||
<mxGeometry x="565" y="140" width="60" height="30" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-51" value="" style="group;aspect=fixed;" vertex="1" connectable="0" parent="1"> | ||
<mxGeometry x="144" y="327" width="70" height="77.78" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-52" value="" style="shape=note;whiteSpace=wrap;html=1;backgroundOutline=1;darkOpacity=0.05;rounded=1;size=20;strokeWidth=2;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-51"> | ||
<mxGeometry x="3.888888888888889" width="62.22222222222222" height="77.78" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-53" value="<font size="1" face="Maven Pro" color="#ffffff"><b style="">Path to BUSCO lineage</b></font>" style="rounded=1;whiteSpace=wrap;html=1;strokeWidth=2;fillColor=#000000;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-51"> | ||
<mxGeometry y="31.112000000000002" width="70" height="31.112000000000002" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-54" value="" style="ellipse;whiteSpace=wrap;html=1;aspect=fixed;rounded=1;rotation=0;strokeWidth=2;" vertex="1" parent="1"> | ||
<mxGeometry x="391" y="120" width="20" height="20" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-55" value="" style="ellipse;whiteSpace=wrap;html=1;aspect=fixed;rounded=1;rotation=0;strokeWidth=2;" vertex="1" parent="1"> | ||
<mxGeometry x="585" y="173" width="20" height="20" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-57" value="" style="group;aspect=fixed;" vertex="1" connectable="0" parent="1"> | ||
<mxGeometry x="142.5" y="231.11" width="70" height="77.78" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-58" value="" style="shape=note;whiteSpace=wrap;html=1;backgroundOutline=1;darkOpacity=0.05;rounded=1;size=20;strokeWidth=2;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-57"> | ||
<mxGeometry x="3.888888888888889" width="62.22222222222222" height="77.78" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="XOOXr_gw0LySKT0VeDug-59" value="<font size="1" face="Maven Pro" color="#ffffff"><b style="font-size: 14px;">Haplotigs assembly</b></font>" style="rounded=1;whiteSpace=wrap;html=1;strokeWidth=2;fillColor=#000000;" vertex="1" parent="XOOXr_gw0LySKT0VeDug-57"> | ||
<mxGeometry y="31.112000000000002" width="70" height="31.112000000000002" as="geometry" /> | ||
</mxCell> | ||
</root> | ||
</mxGraphModel> | ||
</diagram> | ||
</mxfile> |
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,77 @@ | ||
<mxfile host="app.diagrams.net" modified="2023-11-15T09:51:49.458Z" agent="Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/117.0.0.0 Safari/537.36" etag="3JvNj2J1H7uT-692clGV" version="22.0.8" type="device"> | ||
<diagram name="Page-1" id="4GNv6cIebouyW5DHGNJP"> | ||
<mxGraphModel dx="2261" dy="797" grid="1" gridSize="10" guides="1" tooltips="1" connect="1" arrows="1" fold="1" page="1" pageScale="1" pageWidth="827" pageHeight="1169" math="0" shadow="0"> | ||
<root> | ||
<mxCell id="0" /> | ||
<mxCell id="1" parent="0" /> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-4" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;strokeColor=#24B064;exitX=1;exitY=0.75;exitDx=0;exitDy=0;entryX=1;entryY=0.5;entryDx=0;entryDy=0;" edge="1" parent="1" target="PnGjP-H9tmNRagLO0WRX-30"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="-680" y="200" as="sourcePoint" /> | ||
<mxPoint x="-140" y="200" as="targetPoint" /> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-5" value="" style="ellipse;whiteSpace=wrap;html=1;aspect=fixed;rounded=1;rotation=0;strokeWidth=2;" vertex="1" parent="1"> | ||
<mxGeometry x="-540" y="190" width="20" height="20" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-16" value="" style="ellipse;whiteSpace=wrap;html=1;aspect=fixed;rounded=1;rotation=0;strokeWidth=2;" vertex="1" parent="1"> | ||
<mxGeometry x="-383" y="189" width="20" height="20" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-20" value="concatenate reads" style="text;html=1;strokeColor=none;fillColor=none;align=center;verticalAlign=middle;whiteSpace=wrap;rounded=0;" vertex="1" parent="1"> | ||
<mxGeometry x="-560" y="150" width="60" height="30" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-21" value="FastK FastK" style="text;html=1;strokeColor=none;fillColor=none;align=center;verticalAlign=middle;whiteSpace=wrap;rounded=0;" vertex="1" parent="1"> | ||
<mxGeometry x="-401" y="150" width="60" height="30" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-27" value="FastK Histex" style="text;html=1;strokeColor=none;fillColor=none;align=center;verticalAlign=middle;whiteSpace=wrap;rounded=0;" vertex="1" parent="1"> | ||
<mxGeometry x="-236" y="150" width="60" height="30" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-28" value="Genescopefk" style="text;html=1;strokeColor=none;fillColor=none;align=center;verticalAlign=middle;whiteSpace=wrap;rounded=0;" vertex="1" parent="1"> | ||
<mxGeometry x="-237" y="240" width="60" height="30" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-30" value="" style="ellipse;whiteSpace=wrap;html=1;aspect=fixed;rounded=1;rotation=0;strokeWidth=2;" vertex="1" parent="1"> | ||
<mxGeometry x="-217" y="190" width="20" height="20" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-31" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;strokeColor=#24B064;" edge="1" parent="1" source="PnGjP-H9tmNRagLO0WRX-34"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="-340" y="280" as="sourcePoint" /> | ||
<mxPoint x="-200" y="280" as="targetPoint" /> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-32" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;strokeColor=#24B064;" edge="1" parent="1"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="-331" y="280" as="sourcePoint" /> | ||
<mxPoint x="-371" y="240" as="targetPoint" /> | ||
<Array as="points"> | ||
<mxPoint x="-351" y="280" /> | ||
<mxPoint x="-371" y="260" /> | ||
</Array> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-33" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;strokeColor=#24B064;" edge="1" parent="1"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="-371.5" y="249" as="sourcePoint" /> | ||
<mxPoint x="-371.5" y="209" as="targetPoint" /> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-35" value="" style="endArrow=none;html=1;rounded=1;strokeWidth=2;strokeColor=#24B064;" edge="1" parent="1" target="PnGjP-H9tmNRagLO0WRX-34"> | ||
<mxGeometry width="50" height="50" relative="1" as="geometry"> | ||
<mxPoint x="-340" y="280" as="sourcePoint" /> | ||
<mxPoint x="-200" y="280" as="targetPoint" /> | ||
</mxGeometry> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-34" value="" style="ellipse;whiteSpace=wrap;html=1;aspect=fixed;rounded=1;rotation=0;strokeWidth=2;" vertex="1" parent="1"> | ||
<mxGeometry x="-216" y="270" width="20" height="20" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-36" value="" style="group;aspect=fixed;" vertex="1" connectable="0" parent="1"> | ||
<mxGeometry x="-750" y="160" width="70" height="80" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-37" value="" style="shape=note;whiteSpace=wrap;html=1;backgroundOutline=1;darkOpacity=0.05;rounded=1;size=20;strokeWidth=2;" vertex="1" parent="PnGjP-H9tmNRagLO0WRX-36"> | ||
<mxGeometry x="3.888888888888889" width="62.22222222222222" height="80" as="geometry" /> | ||
</mxCell> | ||
<mxCell id="PnGjP-H9tmNRagLO0WRX-38" value="<font data-font-src="https://fonts.googleapis.com/css?family=Maven+Pro" face="Maven Pro" color="#ffffff"><b><font style="font-size: 20px;">Fasta</font></b></font>" style="rounded=1;whiteSpace=wrap;html=1;strokeWidth=2;fillColor=#000000;" vertex="1" parent="PnGjP-H9tmNRagLO0WRX-36"> | ||
<mxGeometry y="32" width="70" height="32" as="geometry" /> | ||
</mxCell> | ||
</root> | ||
</mxGraphModel> | ||
</diagram> | ||
</mxfile> |
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Oops, something went wrong.