Lint and prettify

sanger-tol · Oct 4, 2023 · d4336a1 · d4336a1
1 parent ccac98f
commit d4336a1
Show file tree

Hide file tree

Showing 3 changed files with 62 additions and 152 deletions.
diff --git a/assets/test.yaml b/assets/test.yaml
@@ -14,4 +14,4 @@ busco:
 mito:
   species: Caradrina clavipalpis
   min_length: 15000
-  code: 5
+  code: 5
diff --git a/assets/test_gsMetZobe1.yaml b/assets/test_gsMetZobe1.yaml
@@ -1,14 +1,18 @@
 dataset:
- id: gsMetZobe1
- illumina_10X:
-     reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/10x/
- pacbio:
-     reads:
-       - reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/pacbio/m64125_200823_145825.ccs.bc1019_BAK8B_OA--bc1019_BAK8B_OA.filtered.fasta.gz
- HiC:
-     reads:
-       - reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/hic-arima/35528_4#7.cram
+  id: gsMetZobe1
+  illumina_10X:
+    reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/10x/
+  pacbio:
+    reads:
+      - reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/pacbio/m64125_200823_145825.ccs.bc1019_BAK8B_OA--bc1019_BAK8B_OA.filtered.fasta.gz
+  HiC:
+    reads:
+      - reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/hic-arima/35528_4#7.cram
 hic_motif: GATC,GANTC,CTNAG,TTAA
 busco:
   lineages_path: /lustre/scratch123/tol/resources/busco/v5/
   lineage: fungi_odb10
+mito:
+  species: Metschnikowia zobellii
+  min_length: 15000
+  code: 4