Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

hap1/hap2 scaffolding #51

Merged
merged 16 commits into from
Sep 6, 2024
Merged

hap1/hap2 scaffolding #51

merged 16 commits into from
Sep 6, 2024

Commits on Aug 16, 2024

  1. Initiate scaffolding of hap1/hap2 contigs

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    4eaea4d View commit details
    Browse the repository at this point in the history

  2. Fix modules

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    f2e0856 View commit details
    Browse the repository at this point in the history

  3. Fix naming prefix

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    0a18c54 View commit details
    Browse the repository at this point in the history

  4. Fix naming error

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    830fa9c View commit details
    Browse the repository at this point in the history

  5. Fix meta after hic mapping

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    9a2a39a View commit details
    Browse the repository at this point in the history

  6. Fix collision in scaffolding hap1/hap2 naming

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    92c35da View commit details
    Browse the repository at this point in the history

  7. Run BUSCO on alts for hap1/hap2

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    f23a356 View commit details
    Browse the repository at this point in the history

  8. Move busco constants outside of main block

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    59dd0d5 View commit details
    Browse the repository at this point in the history

  9. Fix warning and do linting checks

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    b0a9671 View commit details
    Browse the repository at this point in the history

  10. Parametrize hap1/hap2 within meta for scaffolding

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    fc3c7f9 View commit details
    Browse the repository at this point in the history

  11. Merge conflict

    Ksenia Krasheninnikova committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    3559a52 View commit details
    Browse the repository at this point in the history

Commits on Aug 29, 2024

  1. Environment file for hifiasm module

    Ksenia Krasheninnikova committed Aug 29, 2024
    Configuration menu
    Copy the full SHA
    1895861 View commit details
    Browse the repository at this point in the history

Commits on Sep 5, 2024

  1. Update usage.md 

    Update test yaml
    @ksenia-krasheninnikova
    ksenia-krasheninnikova authored Sep 5, 2024
    Configuration menu
    Copy the full SHA
    eaa8851 View commit details
    Browse the repository at this point in the history

  2. Update output.md

    @ksenia-krasheninnikova
    ksenia-krasheninnikova authored Sep 5, 2024
    Configuration menu
    Copy the full SHA
    42fee8e View commit details
    Browse the repository at this point in the history

  3. Prettier fix

    Ksenia Krasheninnikova committed Sep 5, 2024
    Configuration menu
    Copy the full SHA
    951a321 View commit details
    Browse the repository at this point in the history

Commits on Sep 6, 2024

  1. Update output.md

    @ksenia-krasheninnikova
    ksenia-krasheninnikova authored Sep 6, 2024
    Configuration menu
    Copy the full SHA
    cbc319e View commit details
    Browse the repository at this point in the history