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Unable to load visium HD data using seurat #9394

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Yijia-Jiang opened this issue Oct 12, 2024 · 1 comment
Open

Unable to load visium HD data using seurat #9394

Yijia-Jiang opened this issue Oct 12, 2024 · 1 comment

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@Yijia-Jiang
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Hello, I am trying to load visium HD data using the following command:

Load10X_Spatial(data.dir = localdir, filename="filtered_feature_bc_matrix.h5")

However, my r session is killed. The size of matrix is about 300MB, which should not incur killed session. Did I do anything wrong for loading the data?
@joan-yanqiong
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what is the value of localdir?

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@joan-yanqiong @Yijia-Jiang