[Improvement] add synthseg option to anatomical_segmentation

[anroy1]

Describe your changes

Add the synthseg option to anatomical_segmentation

List test packages used by your module

• T1w.zip
• freesurfer_nifti.zip

Checklist before requesting a review

• Create the tool:
  • Edit ./modules/nf-scil/<category>/<tool>/main.nf
  • Edit ./modules/nf-scil/<category>/<tool>/meta.yml
• Generate the tests:
  • Edit ./tests/modules/nf-scil/<category>/<tool>/main.nf
  • Edit ./tests/modules/nf-scil/<category>/<tool>/nextflow.config
  • Add test data locally for tests with the fork repository
  • Generate the test infrastructure and md5sum for all outputs
• Ensure the syntax is correct :
  • Check indentation abides with the rest of the library (don't hesitate to correct others !)
  • Lint everything. Ensure your variables have good names.

To Do

Pass synthseg module to run and debug tests

[AlexVCaron]

Again with the syntax, all code functionnalities seem to be there ! It's going to be merged fast !

[AlexVCaron]

I've left a comment that should get you out of the process killing. Another one we should discuss live 😉

[AlexVCaron]

I have yet to run the tests and check the meta, but this first comment should help you move along a bit.

[AlexVCaron]

Got some comments, but they are minor. Once addressed, we can focus on making the runners abide by the tests 😂 we're almost there, I believe the next problems we'll hit will be resources, then that's it ! Hopefully 🍀

[AlexVCaron]

After considerations, you won't attain reproducibility. Defer to using only the names in all use-cases involving synthseg