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scilus · Sep 12, 2024 · 610eb3e · 610eb3e
1 parent b2bed2b
commit 610eb3e
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diff --git a/modules/nf-scil/registration/easyreg/main.nf b/modules/nf-scil/registration/easyreg/main.nf
@@ -40,7 +40,7 @@ process REGISTRATION_EASYREG {
         reference_segmentation="${prefix}_reference_segmentation.nii.gz"
     fi
 
-        if [[ -f "$flo_segmentation" ]];
+    if [[ -f "$flo_segmentation" ]];
     then
         floating_segmentation=$flo_segmentation
     else

diff --git a/modules/nf-scil/registration/easyreg/tests/nextflow.config b/modules/nf-scil/registration/easyreg/tests/nextflow.config
@@ -4,5 +4,6 @@ process {
         publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
         ext.field = true
         ext.affine = true
+        ext.threads = 1
     }
 }