2.4.4

🎉 Tractoflow 2.4.4 is ready 🎉

It's our latest release using nextflow DSL1 - I know I already said that last time :|
We fixed three small issues regarding some Philips data as well as some memory we had with eddy and local tracking and finally some issues with gpu tracking.

Hopefully this is our latest version for real 😅

This new version uses also the latest version of scilpy 1.6.0

What's Changed

• [WIP] Increase memory and cpu for eddy and local_tracking processes by @arnaudbore in #88
• FIX - Philips data with scaling factor makes topup fail by @arnaudbore in #92
• [BF] Fix force by @arnaudbore in #93
• correction of local tracking on gpu and batsh_size option by @ThoumyreStanislas in #94

New Contributors

• @ThoumyreStanislas made their first contribution in #94

Full Changelog: 2.4.3...2.4.4

2.4.3

🎉 Tractoflow 2.4.3 is ready 🎉

It's our latest release using nextflow DSL1
Next version will be using DSL 2 and will have a completely different organisation.

This new version uses also the latest version of scilpy 1.6.0

Highlight of this version:

• [ENH] GPU tracking 🥳
• [BF] Some BIDS improvement

Thanks @AlexVCaron and @CHrlS98

Arnaud

What's Changed

• Fix bc not supporting python scientific notation by @AlexVCaron in #82
• [WIP] BIDS fix by @arnaudbore in #75
• [BF] tractoflow fails if rev_b0 is 4D by @arnaudbore in #84
• [ENH] Nextflow version and nextflow work dir by @arnaudbore in #85
• [BF] Skip eddy wrong gradients by @arnaudbore in #86
• [ENH] update error message when rev_DWI and not cuda profile by @arnaudbore in #87
• [ENH] Add gpu local tracking by @arnaudbore in #80

New Contributors

• @AlexVCaron made their first contribution in #82

Full Changelog: 2.4.2...2.4.3

2.4.2

🥳 New tractoflow release 🥳

This release is compatible with scilus-1.5.0

What's Changed

• Update tractoflow - new container by @arnaudbore in #72

Full Changelog: 2.4.1...2.4.2

2.4.1

🎉 Quick fix for this release. 🎉

Now tractoflow is able to handle DWI acquisition with phase and mag parts.
Thank you @AlexVCaron

Arnaud

2.4.0

New tractoflow release !!

Thank you all for the good work especially 🔥 @AlexVCaron 🔥 and 🔥 @frheault 🔥

What's Changed

• [NF] Add profiles for specific usage by @arnaudbore in #59
• [WIP] Fix bundling by @arnaudbore in #61
• Extract shells by @arnaudbore in #60
• RF - skip bet_prelim_dwi if run_eddy is false by @gabknight in #68
• add remove invalid streamline after PFT and local tracking by @arnaudbore in #69
• Add possibility to have full AP-PA LR-RL data by @arnaudbore in #67

New Contributors

• @gabknight made their first contribution in #68

Full Changelog: 2.3.0...2.4.0

2.3.0

New Tractoflow release

⚠️ Compatible with scilpy>=1.3.0

What's Changed

• Add Atlas Based Segmentation (ABS) profile by @GuillaumeTh in #51
• Add option to compute dwi sh by @ppoulin91 in #41
• NF: Gibbs correction by @arnaudbore in #55
• HCP profile by @GuillaumeTh in #53
• Fix condition when only eddy by @arnaudbore in #56
• [NF] Compatible scilpy 1.3.0 by @arnaudbore in #57

New Contributors

• @ppoulin91 made their first contribution in #41

Full Changelog: 2.2.1...2.2.2

2.2.1

Bugs Fixed:

• participants_label
• FA Tracking
• Reproducibility

New features:

• Add cbrain profile - mode copy

2.2.1-rc5

BF - Reproducibility

2.2.1-rc4

BF Fix participant label

2.2.1-rc3

EHN: Add cbrain profile - mode copy