Problem in Aggregate_All_Bundle_Length_Stats (Statistics) process

[ErickHernandezGutierrez]

I'm using the lastest scilpy and tractometry_flow master.

I got the following error trace:

Error executing process > 'Aggregate_All_Bundle_Length_Stats (Statistics)'

Caused by:
  Process `Aggregate_All_Bundle_Length_Stats (Statistics)` terminated with an error exit status (1)

Command executed:

  scil_merge_json.py sub-001_ses-1__length_stats.json length_stats.json --no_list
  scil_harmonize_json.py length_stats.json length_stats.json -f -v --sort_keys
  scil_convert_json_to_xlsx.py length_stats.json length_stats.xlsx

Command exit status:
  1

Command output:

  Layered keys of the dictionary:
  ['sub-001_ses-1']
  ['bundle-10', 'bundle-11', 'bundle-12', 'bundle-13', 'bundle-14', 'bundle-15', 'bundle-16', 'bundle-17', 'bundle-18', 'bundle-19', 'bundle-1', 'bundle-20', 'bundle-2', 'bundle-3', 'bundle-4', 'bundle-5', 'bundle-6', 'bundle-7', 'bundle-8', 'bundle-9']
  ['min_length_mm', 'mean_length_mm', 'max_length_mm', 'std_length_mm', 'min_length_nb_points', 'mean_length_nb_points', 'max_length_nb_points', 'std_length_nb_points', 'min_step_size', 'mean_step_size', 'max_step_size', 'std_step_size', 'data_per_point_keys', 'data_per_streamline_keys']



Command error:

  This script has been renamed scil_json_harmonize_entries.py.
  Please change your existing pipelines accordingly.


  AS OF VERSION 1.9, CALLING THIS SCRIPT WILL RAISE <class 'scilpy.io.deprecator.ScilpyExpiredDeprecation'>

  =========================================================================================================

  Layered keys of the dictionary:
  ['sub-001_ses-1']
  ['bundle-10', 'bundle-11', 'bundle-12', 'bundle-13', 'bundle-14', 'bundle-15', 'bundle-16', 'bundle-17', 'bundle-18', 'bundle-19', 'bundle-1', 'bundle-20', 'bundle-2', 'bundle-3', 'bundle-4', 'bundle-5', 'bundle-6', 'bundle-7', 'bundle-8', 'bundle-9']
  ['min_length_mm', 'mean_length_mm', 'max_length_mm', 'std_length_mm', 'min_length_nb_points', 'mean_length_nb_points', 'max_length_nb_points', 'std_length_nb_points', 'min_step_size', 'mean_step_size', 'max_step_size', 'std_step_size', 'data_per_point_keys', 'data_per_streamline_keys']


  sys:1: DeprecationWarning:
  =========================================================================================================

  !!! WARNING !!! THIS SCRIPT IS DEPRECATED !!!

  =========================================================================================================

  sys:1: DeprecationWarning:
  =========================================================================================================

  This script has been renamed scil_json_convert_entries_to_xlsx.py.
  Please change your existing pipelines accordingly.


  AS OF VERSION 1.9, CALLING THIS SCRIPT WILL RAISE <class 'scilpy.io.deprecator.ScilpyExpiredDeprecation'>

  =========================================================================================================


  Traceback (most recent call last):
    File "/home/local/USHERBROOKE/here2602/.local/bin/scil_convert_json_to_xlsx.py", line 33, in <module>
      sys.exit(load_entry_point('scilpy', 'console_scripts', 'scil_convert_json_to_xlsx.py')())
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scilpy/io/deprecator.py", line 93, in _wrapper
      return _raise_warning(_block(header, msg_length),
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scilpy/io/deprecator.py", line 54, in _raise_warning
      return func(*args, **kwargs)
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scripts/legacy/scil_convert_json_to_xlsx.py", line 17, in main
      new_main()
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scripts/scil_json_convert_entries_to_xlsx.py", line 484, in main
      _create_xlsx_from_json(args.in_json, args.out_xlsx,
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scripts/scil_json_convert_entries_to_xlsx.py", line 439, in _create_xlsx_from_json
      cur_stats_func = _get_stats_parse_function(stats, stats_over_population)
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scripts/scil_json_convert_entries_to_xlsx.py", line 99, in _get_stats_parse_function
      raise IOError('Unable to recognize stats type!')
  OSError: Unable to recognize stats type!

Work dir:
  /home/local/USHERBROOKE/here2602/SCIL/phantom_inferno/experiments/test/work/a5/fe9b044732c234c03449a5ebc7fe23

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`

For what I understood the scripts
-> scil_merge_json.py
-> scil_harmonize_json.py
-> scil_convert_json_to_xlsx.py
changed for
-> scil_json_merge_entries.py
-> scil_json_harmonize_entries.py
-> scil_json_convert_entries_to_xlsx.py

However, once I change the script names in the source code, I get this error with the stats type:

Error executing process > 'Aggregate_All_Bundle_Length_Stats (Statistics)'

Caused by:
  Process `Aggregate_All_Bundle_Length_Stats (Statistics)` terminated with an error exit status (1)

Command executed:

  scil_json_merge_entries.py sub-001_ses-1__length_stats.json length_stats.json --no_list
  scil_json_harmonize_entries.py length_stats.json length_stats.json -f -v --sort_keys
  scil_json_convert_entries_to_xlsx.py length_stats.json length_stats.xlsx

Command exit status:
  1

Command output:
  Layered keys of the dictionary:
  ['sub-001_ses-1']
  ['bundle-10', 'bundle-11', 'bundle-12', 'bundle-13', 'bundle-14', 'bundle-15', 'bundle-16', 'bundle-17', 'bundle-18', 'bundle-19', 'bundle-1', 'bundle-20', 'bundle-2', 'bundle-3', 'bundle-4', 'bundle-5', 'bundle-6', 'bundle-7', 'bundle-8', 'bundle-9']
  ['min_length_mm', 'mean_length_mm', 'max_length_mm', 'std_length_mm', 'min_length_nb_points', 'mean_length_nb_points', 'max_length_nb_points', 'std_length_nb_points', 'min_step_size', 'mean_step_size', 'max_step_size', 'std_step_size', 'data_per_point_keys', 'data_per_streamline_keys']

Command error:
  Layered keys of the dictionary:
  ['sub-001_ses-1']
  ['bundle-10', 'bundle-11', 'bundle-12', 'bundle-13', 'bundle-14', 'bundle-15', 'bundle-16', 'bundle-17', 'bundle-18', 'bundle-19', 'bundle-1', 'bundle-20', 'bundle-2', 'bundle-3', 'bundle-4', 'bundle-5', 'bundle-6', 'bundle-7', 'bundle-8', 'bundle-9']
  ['min_length_mm', 'mean_length_mm', 'max_length_mm', 'std_length_mm', 'min_length_nb_points', 'mean_length_nb_points', 'max_length_nb_points', 'std_length_nb_points', 'min_step_size', 'mean_step_size', 'max_step_size', 'std_step_size', 'data_per_point_keys', 'data_per_streamline_keys']

  Traceback (most recent call last):
    File "/home/local/USHERBROOKE/here2602/.local/bin/scil_json_convert_entries_to_xlsx.py", line 33, in <module>
      sys.exit(load_entry_point('scilpy', 'console_scripts', 'scil_json_convert_entries_to_xlsx.py')())
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scripts/scil_json_convert_entries_to_xlsx.py", line 484, in main
      _create_xlsx_from_json(args.in_json, args.out_xlsx,
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scripts/scil_json_convert_entries_to_xlsx.py", line 439, in _create_xlsx_from_json
      cur_stats_func = _get_stats_parse_function(stats, stats_over_population)
    File "/home/local/USHERBROOKE/here2602/SCIL/scilpy/scripts/scil_json_convert_entries_to_xlsx.py", line 99, in _get_stats_parse_function
      raise IOError('Unable to recognize stats type!')
  OSError: Unable to recognize stats type!

Work dir:
  /home/local/USHERBROOKE/here2602/SCIL/phantom_inferno/experiments/test/work/60/ec8e3d38ced6692880f82862e75fac

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`