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Update stats plots, add longitudinal sample size calculation #98

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Commits on Jan 25, 2021

  1. update plots to match manuscript

    - update plots: sample_size, error_function_of_csa
    - update legends: boxplot_atrophy, boxplot_csa
    PaulBautin committed Jan 25, 2021
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Commits on Mar 11, 2021

  1. add:

    - expected trend and mean values on CSA boxplot
    - mean values on atrophy boxplot
    - add function for adding pearson's r and p-value stats
    - add diff and std diff column in dataframe for sample size computation
    - add longitudinal study sample size
    
    change:
    - correct difference between means (atrophy_% * CSA) on sample size plot
    - correct x_label on error_function_of_CSA
    - correct x_label on error_function_of_intra_cov
    - automatize the detection of outliers on error_function_of_intra_cov_outlier
    PaulBautin committed Mar 11, 2021
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Commits on Mar 17, 2021

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  3. Added TODOs

    jcohenadad committed Mar 17, 2021
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Commits on Mar 18, 2021

  1. Merge remote-tracking branch 'origin/graph' into graph

    # Conflicts:
    #	csa_rescale_stat.py
    PaulBautin committed Mar 18, 2021
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Commits on May 13, 2021

  1. - correct diff formula by integrating transformation variability (bef…

    …ore this diff was computed from mean CSA across transformations)
    PaulBautin committed May 13, 2021
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Commits on May 20, 2021

  1. - change formula for sample size

    - add comments
    PaulBautin committed May 20, 2021
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Commits on May 21, 2021

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  3. - remove rounding before boxplots for csa and atrophy

    - normalize by the square of rescale for df['Normalized CSA in mm²']
    - use poly1d when plotting trends in plots
    PaulBautin committed May 21, 2021
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  4. - scatter colorbar takes discrete values

    - append fake values for pearson and and p_value for rescale =1
    PaulBautin committed May 21, 2021
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Commits on May 27, 2021

  1. - compute sample size using 500 itterations

    - un-comment concatenating csv files
    PaulBautin committed May 27, 2021
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  2. - update sample size plot to match article

    - change iteration number for computing sample size and print message
    PaulBautin committed May 27, 2021
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Commits on May 31, 2021

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Commits on Jul 25, 2024

  1. add egg info

    sandrinebedard committed Jul 25, 2024
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Commits on Aug 1, 2024

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Commits on Aug 6, 2024

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Commits on Aug 8, 2024

  1. change for sct

    sandrinebedard committed Aug 8, 2024
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Commits on Aug 13, 2024

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Commits on Aug 14, 2024

  1. rsync disc file

    sandrinebedard committed Aug 14, 2024
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Commits on Aug 16, 2024

  1. rm qc from sct_deepseg

    sandrinebedard committed Aug 16, 2024
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  2. fix missing eextension

    sandrinebedard committed Aug 16, 2024
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  3. remove extra QC

    sandrinebedard committed Aug 16, 2024
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Commits on Aug 19, 2024

  1. remove one qc report

    sandrinebedard committed Aug 19, 2024
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  2. remove all QC reports

    sandrinebedard committed Aug 19, 2024
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  3. remove all qc reports

    sandrinebedard committed Aug 19, 2024
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Commits on Aug 27, 2024

  1. add logging

    sandrinebedard committed Aug 27, 2024
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