conda.yaml

name: conda

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  test:
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -e {0} # -e to fail on error

    strategy:
      fail-fast: false
      matrix:
        include:
          - os: ubuntu-latest
            python: "3.9"

    env:
      OS: ${{ matrix.os }}
      PYTHON: ${{ matrix.python }}

    steps:
      - uses: actions/checkout@v3

      - name: Setup Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          channels: conda-forge,bioconda
          channel-priority: strict
          python-version: ${{ matrix.python-version }}

      - name: install conda build
        # TODO pinning conda-build version because it stopped working for no good reason in 3.25 or 3.26.
        run: |
          mamba install -y conda-build=3.24.0 conda-verify
        shell: bash

      - name: build and test package
        run: |
          cd .conda
          mamba build --no-anaconda-upload .
        shell: bash