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Issues: scverse/scirpy

scverse datastructure for AIRR data
#327 by grst was closed Apr 7, 2023
Closed 57
module 'scirpy.pp' has no attribute 'index_chains'
#416 by xuezhang335 was closed Jun 9, 2023
Closed 2
Can't install scirpy on Apple Silicon
#450 by a-munoz-rojas was closed Aug 30, 2024
Closed 10
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38 Open 260 Closed
38 Open 260 Closed
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Issues list

Add support for spot-based spatial data and bulk data
#583 opened Dec 16, 2024 by grst
How to Add sequence_id Information to mudata['airr'].obsm['airr'] When Reading 10X VDJ Results
#581 opened Dec 13, 2024 by erlun1
1
Dealing with alleles and multiple gene calls
#561 opened Oct 8, 2024 by grst
@felixpetschko
6
Refactor distance metric histogram
#548 opened Aug 30, 2024 by grst
@felixpetschko
Community tutorial page
#495 opened Feb 28, 2024 by grst
Add the Morisita-Horn index for repertoire overlap similarity scores
#488 opened Jan 29, 2024 by NicolasSompairac
1
Make sure axes of nextwork plots don't have any ticks bug Something isn't working good first issue Good for newcomers
#486 opened Jan 26, 2024 by grst
Large dataset tutorial documentation Improvements or additions to documentation
#479 opened Jan 11, 2024 by grst
1
IEDB database cdr3_aa stored as junction_aa bug Something isn't working
#469 opened Dec 14, 2023 by racng
1
10
ir.tl.chain_qc doesn't mark cells with no IR bug Something isn't working
#452 opened Sep 18, 2023 by a-munoz-rojas
1
@grst
2
Can't save h5mu from Scirpy processed gex+bcr+tcr data if I copy airr into obs bug Something isn't working
#434 opened Jul 19, 2023 by Ngort
3
Plot preview doesn't show in API docs documentation Improvements or additions to documentation
#429 opened Jul 5, 2023 by grst
1
1
In ir.pl.repertoire_overlap() function the fraction param is not working bug Something isn't working
#424 opened Jul 3, 2023 by llumdi
4
Can Scirpy be used for the analysis of regular RNA-seq sequencing data? question Further information is requested
#417 opened Jun 8, 2023 by yirenheihei
3
Hackathon: add generic_ir_from_biocypher() function to ingest TCR data
#404 opened Apr 28, 2023 by slobentanzer
3
Refactor _get_color function to stop using private scanpy functions and to work with mudata
#388 opened Mar 29, 2023 by grst
Split IO into separate package
#385 opened Mar 16, 2023 by grst
2
clean up usage of _is_na, _is_true and _is_false
#380 opened Jan 29, 2023 by grst
antigen specificity prediction
#371 opened Oct 18, 2022 by grst
1
Autoencoder-based sequence embedding
#369 opened Oct 9, 2022 by grst
10
Speed up read_airr
#367 opened Oct 9, 2022 by grst
spatial airr data
#354 opened Jul 6, 2022 by grst
6
Why clonotype_imbalance is deprecated?
#330 opened Mar 30, 2022 by naity2
5
Remove unused labels from antigen-annotated clonotype networks good first issue Good for newcomers
#321 opened Feb 2, 2022 by FFinotello
Improve clonotype network plot with plotAtlas
#318 opened Jan 13, 2022 by grst
1
ProTip! Adding no:label will show everything without a label.