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Add the Morisita-Horn index for repertoire overlap similarity scores #488

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NicolasSompairac opened this issue Jan 29, 2024 · 1 comment

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@NicolasSompairac
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NicolasSompairac commented Jan 29, 2024

Hi there,

I've recently started using scirpy for TCR analyses. For the repertoire overlap, the scipy distances are the only available scores it seems (with Jaccard being the default one).

Do you think it would be possible to also integrate the Morisita-Horn similarity index, as it seems to be the standard measure used in most publications?

Best,

Nicolas

@NicolasSompairac NicolasSompairac changed the title Add the Morisita index for repertoire overlap similarity scores Add the Morisita-Horn index for repertoire overlap similarity scores Jan 29, 2024
@grst
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grst commented Jan 30, 2024

Sure, I'd be happy to support this. Could you point me to 1-2 publications where this has been used?

@grst grst added this to scirpy-dev May 28, 2024
@grst grst moved this to ToDo in scirpy-dev May 28, 2024
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